Browse Element(s) Details


Os.54688.1.S1_at

Description gb:AK106472.1
DB_XREF= gi:32991681
TID=Os.54688.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54688 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-104-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-A11, full insert sequence.
FL= gb:AK106472.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3909011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39050OsAffx.20020.1.S1_x_at11/1112+23994523..23995360hypothetical protein
LOC_Os12g39060OsAffx.20021.1.S1_at11/1112+23995614..23995970hypothetical protein
LOC_Os12g39070Os.54260.1.S1_at11/1112+23997666..24002140TATA-binding protein 2, putative, expressed
LOC_Os12g39070Os.53520.1.A1_at1/1112+23997666..24002140TATA-binding protein 2, putative, expressed
LOC_Os12g39080Os.16012.1.S1_at11/1112+24004084..24006046amino acid permease family protein, putative, expressed
LOC_Os12g39080OsAffx.13037.1.S1_x_at1/1112+24004084..24006046amino acid permease family protein, putative, expressed
LOC_Os12g39090Os.54688.1.S1_at11/1112+24011650..24013552expressed protein
LOC_Os12g39100Os.55696.1.S1_at11/1112+24019122..24021234expressed protein
LOC_Os12g39110Os.14150.1.S1_at11/1112+24027070..24031072Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g39110OsAffx.16870.1.S1_x_at1/1112+24027070..24031072Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g39110OsAffx.19796.1.S1_x_at1/1112+24027070..24031072Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g39120Os.22969.1.S1_at11/1112+24032752..24036050protein phosphatase 2C family protein, putative, expressed
LOC_Os12g39130NANA12+24038325..24038936expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54688.1.S1_at--309--2551Chr12:24013228..24013252 (25 bp)
AACTCCTCTCGGGTACGTGACAAGA
LOC_Os12g39090
Os.54688.1.S1_at--487--6531Chr12:24013251..24013275 (25 bp)
GATTTCTGCTCATCTGTTAAACGGA
LOC_Os12g39090
Os.54688.1.S1_at--1127--1051Chr12:24013282..24013306 (25 bp)
AGGGTGGCTAGTTATCTCGGATTCT
LOC_Os12g39090
Os.54688.1.S1_at--871--10451Chr12:24013313..24013332 (20 bp)
TTAGCGAATCTTATGTTGACCAGTG
LOC_Os12g39090
Os.54688.1.S1_at--720--10731Chr12:24013323..24013347 (25 bp)
TTGACCAGTGTAGGCAACCTGTCGC
LOC_Os12g39090
Os.54688.1.S1_at--343--2631Chr12:24013338..24013362 (25 bp)
AACCTGTCGCAGTGTTGCATTGCCA
LOC_Os12g39090
Os.54688.1.S1_at--1080--4931Chr12:24013354..24013378 (25 bp)
GCATTGCCATTCATTCTGCTGTAGA
LOC_Os12g39090
Os.54688.1.S1_at--565--9771Chr12:24013383..24013407 (25 bp)
TACAGTTTAGTTAGGTTCAGGCGGA
LOC_Os12g39090
Os.54688.1.S1_at--362--8731Chr12:24013419..24013443 (25 bp)
TGTCATAGGGCTGGGTGGTACACCC
LOC_Os12g39090
Os.54688.1.S1_at--315--7031Chr12:24013436..24013460 (25 bp)
GTACACCCATGGCTTTTGGTGGTCA
LOC_Os12g39090
Os.54688.1.S1_at--15--7371Chr12:24013488..24013512 (25 bp)
GTGAACTTCCATTACTTGTGATTAA
LOC_Os12g39090
Target Sequence 
AACTCCTCTCGGGTACGTGACAAGATTTCTGCTCATCTGTTAAACGGATGAATGAGGGTGGCTAGTTATCTCGGATTCTT
TTAGCGAATCTTATGTTGACCAGTGTAGGCAACCTGTCGCAGTGTTGCATTGCCATTCATTCTGCTGTAGAAAGCTACAG
TTTAGTTAGGTTCAGGCGGAGGGAGAGTTAGTGTCATAGGGCTGGGTGGTACACCCATGGCTTTTGGTGGTCAGGATGAT
ACATCTTAGGGTACATGATAGTGAACTTCCATTACTTGTGATTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54688.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis