Browse Element(s) Details


Os.54721.1.A1_at

Description gb:AK106591.1
DB_XREF= gi:32991800
TID=Os.54721.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.54721 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-G06, full insert sequence.
FL= gb:AK106591.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5155010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51500Os.12337.2.S1_x_at11/115+29445291..29451410Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os05g51500Os.56152.1.S1_x_at11/115+29445291..29451410Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os05g51500Os.12337.1.S1_at11/115+29445291..29451410Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os05g51500OsAffx.29835.1.S1_x_at1/115+29445291..29451410Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os05g51510Os.52518.1.S1_at10/115+29455174..29458747Protein phosphatase 2C ABI2, putative, expressed
LOC_Os05g51520Os.27568.1.S1_at11/115+29461830..29463367expressed protein
LOC_Os05g51530Os.15057.1.S1_at11/115+29464179..29468393Vacuolar ATP synthase subunit C, putative, expressed
LOC_Os05g51540Os.14691.1.S1_at11/115+29469257..29470753expressed protein
LOC_Os05g51550OsAffx.15198.1.S1_x_at11/115+29471513..29476608expressed protein
LOC_Os05g51550Os.54721.1.A1_at10/115+29471513..29476608expressed protein
LOC_Os05g51560Os.21837.1.S1_at11/115+29487871..29492718Casein kinase I, delta isoform, putative, expressed
LOC_Os05g51570Os.50784.1.S1_at11/115+29495779..29497300Vacuolar processing enzyme precursor, putative, expressed
LOC_Os05g51580OsAffx.27406.1.S1_at11/115+29500557..29501019hypothetical protein
LOC_Os05g51590Os.10294.1.S1_at11/115+29501485..29502876B2 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54721.1.A1_at--386--4271Chr05:29472232..29472256 (25 bp)
CCTGGGCCTGGCTGATGATAAATTA
LOC_Os05g51550
Os.54721.1.A1_at--154--10511Chr05:29472210..29472234 (25 bp)
TTAATCTGGGTTGGTCACTTTTACA
LOC_Os05g51550
Os.54721.1.A1_at--822--7071Chr05:29472197..29472221 (25 bp)
GTCACTTTTACAGAGCAACCCTTTT
LOC_Os05g51550
Os.54721.1.A1_at--324--51NONE
ATTGTACAGGTGTCAGTGACTCCGT
NONE
Os.54721.1.A1_at--59--7371Chr05:29471827..29471851 (25 bp)
GTGACTCCGTAACATGGAAGCTGCG
LOC_Os05g51550
Os.54721.1.A1_at--989--71Chr05:29471786..29471810 (25 bp)
ATTCAACTTGGAGCTAATCGTAATC
LOC_Os05g51550
Os.54721.1.A1_at--202--6951Chr05:29471748..29471772 (25 bp)
GTAGATAGTTGTTTCCGTGCCATTT
LOC_Os05g51550
Os.54721.1.A1_at--803--5051Chr05:29471657..29471681 (25 bp)
GCAGCGGCAAACTTCGTTTCTTTTT
LOC_Os05g51550
Os.54721.1.A1_at--669--8651Chr05:29471611..29471635 (25 bp)
TGGGCCCGGCTGTATATTTTCGATG
LOC_Os05g51550
Os.54721.1.A1_at--866--10191Chr05:29471599..29471623 (25 bp)
TATATTTTCGATGCGAGGTCCATGC
LOC_Os05g51550
Os.54721.1.A1_at--298--9811Chr05:29471549..29471573 (25 bp)
TAACCCTGTAATTGCTTCAACTACA
LOC_Os05g51550
Target Sequence 
CCTGGGCCTGGCTGATGATAAATTAATCTGGGTTGGTCACTTTTACAGAGCAACCCTTTTTTTGAAATCTAAAGTTATTG
TACAGGTGTCAGTGACTCCGTAACATGGAAGCTGCGGATGATAGTGATGTTAATTCAACTTGGAGCTAATCGTAATCNCC
TTAGTGTCAGGTAGATAGTTGTTTCCGTGCCATTTTAAGTCCNCCTTTAGAAGGTGAAATATGTTTTATGCAGTCTAGAT
AACTGGATGGAGGTGGCTGTTGCAGCGGCAAACTTCGTTTCTTTTTGGTGGATTNTGACCCAAATCCTGGGCCCGGCTGT
ATATTTTCGATGCGAGGTCCATGCNTTCTAGAATCAGGAGGATAAAGTGTAACCCTGTAATTGCTTCAACTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54721.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis