Browse Element(s) Details


Os.54731.1.S1_at

Description gb:AK106628.1
DB_XREF= gi:32991837
TID=Os.54731.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54731 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-113-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-C10, full insert sequence.
FL= gb:AK106628.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3690010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g36840OsAffx.4007.1.S1_at11/114+22020147..22023130pentatricopeptide, putative, expressed
LOC_Os04g36850OsAffx.26358.1.S1_at10/114+22024778..22027275expressed protein
LOC_Os04g36859Os.8619.1.S1_at7/114+22027808..22029970signal peptidase complex 25 kDa subunit, putative, expressed
LOC_Os04g36859Os.52782.1.S1_at1/114+22027808..22029970signal peptidase complex 25 kDa subunit, putative, expressed
LOC_Os04g36868NANA4+22030156..22030559expressed protein
LOC_Os04g36880NANA4+22038055..22038429expressed protein
LOC_Os04g36890Os.16231.1.S1_s_at11/114+22039220..22043505peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os04g36890Os.16231.1.S2_at11/114+22039220..22043505peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os04g36900Os.54731.1.S1_at10/114+22045539..22047542expressed protein
LOC_Os04g36900OsAffx.14173.1.S1_x_at8/114+22045539..22047542expressed protein
LOC_Os04g36910Os.19133.1.S1_at11/114+22048011..22053244expressed protein
LOC_Os04g37410OsAffx.14174.1.S1_at11/114+22065231..22066560hypothetical protein
LOC_Os04g37420OsAffx.26360.1.S1_at11/114+22068482..22068706hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54731.1.S1_at--161--3031Chr04:22046906..22046927 (22 bp)
AATGCCGACTCAGTTTGTTTCTAGA
LOC_Os04g36900
Os.54731.1.S1_at--338--151Chr04:22047070..22047094 (25 bp)
ATTACCAGTACTTTGCTTCAGCACT
LOC_Os04g36900
Os.54731.1.S1_at--270--5111Chr04:22047090..22047114 (25 bp)
GCACTGAACCAGTCGAAGCTCGTCA
LOC_Os04g36900
Os.54731.1.S1_at--894--2691Chr04:22047105..22047129 (25 bp)
AAGCTCGTCAGGGACCTTGAAGTTT
LOC_Os04g36900
Os.54731.1.S1_at--704--2831Chr04:22047124..22047148 (25 bp)
AAGTTTGTTTGTGCTCATGACGGTT
LOC_Os04g36900
Os.54731.1.S1_at--1077--9591Chr04:22047230..22047254 (25 bp)
TCATTTCTGTACCTTGCTGTCTGAA
LOC_Os04g36900
Os.54731.1.S1_at--1027--8711Chr04:22047247..22047271 (25 bp)
TGTCTGAATGCTTCTGGTGCTGCAG
LOC_Os04g36900
Os.54731.1.S1_at--917--6351Chr04:22047320..22047344 (25 bp)
GATGCCAGAACTTTTGAATCTCCAA
LOC_Os04g36900
Os.54731.1.S1_at--504--471Chr04:22047337..22047361 (25 bp)
ATCTCCAATCTATTTCACCTTAAGC
LOC_Os04g36900
Os.54731.1.S1_at--903--4891NONE
GCTTAGCTTTTTTCATTGACAGCCT
NONE
Os.54731.1.S1_at--910--10751Chr04:22047375..22047399 (25 bp)
TTGACAGCCTGTTAGAGTTTTTCTT
LOC_Os04g36900
Target Sequence 
AATGCCGACTCAGTTTGTTTCTAGAAGGAAGGATGTGACCTGCCCGGCGAGATGGTGATTACCAGTACTTTGCTTCAGCA
CTGAACCAGTCGAAGCTCGTCAGGGACCTTGAAGTTTGTTTGTGCTCATGACGGTTGAAAGACATGAGGGAGAGCGGGAA
AGACAGCAGCGAGTGGATGTCCTGTAGATGGTGAAGGACACACCCCCACCCCCACCCTCATTTCTGTACCTTGCTGTCTG
AATGCTTCTGGTGCTGCAGAGTCTGTTAGGCAAAGTCTTTTTTGAGTTAAACCTTTTGAATCTAATCGATGCCAGAACTT
TTGAATCTCCAATCTATTTCACCTTAAGCTTAGCTTTTTTCATTGACAGCCTGTTAGAGTTTTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54731.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis