Browse Element(s) Details


Os.54732.1.S1_at

Description gb:AK106629.1
DB_XREF= gi:32991838
TID=Os.54732.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54732 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-113-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-C11, full insert sequence.
FL= gb:AK106629.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4959011/11regulatory protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49550OsAffx.26540.1.S1_s_at11/114+29333054..29334019expressed protein
LOC_Os04g49550Os.54859.1.S1_at10/114+29333054..29334019expressed protein
LOC_Os04g49560Os.54479.1.S1_at11/114+29337808..29344158DHHC zinc finger domain containing protein, expressed
LOC_Os04g49570Os.15729.2.S1_at11/114+29346856..29351027Glutamate receptor 3.3 precursor, putative, expressed
LOC_Os04g49570Os.15729.2.S1_x_at11/114+29346856..29351027Glutamate receptor 3.3 precursor, putative, expressed
LOC_Os04g49570Os.15729.1.S1_at4/114+29346856..29351027Glutamate receptor 3.3 precursor, putative, expressed
LOC_Os04g49580Os.10745.1.S1_at10/114+29352529..29358583CBF/Mak21 family protein, expressed
LOC_Os04g49590Os.54732.1.S1_at11/114+29358868..29362046regulatory protein, putative, expressed
LOC_Os04g49600OsAffx.4129.1.S1_at11/114+29362520..29363676hypothetical protein
LOC_Os04g49610Os.9407.1.S1_at11/114+29364754..29366574expressed protein
LOC_Os04g49620Os.51206.1.S1_at11/114+29369164..29371427expressed protein
LOC_Os04g49630OsAffx.14346.1.S1_at10/114+29372531..29374632hypothetical protein
LOC_Os04g49640OsAffx.19542.3.S1_x_at3/114+29377372..29381311retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g49650Os.12323.1.S1_a_at11/114+29386589..29388086expressed protein
LOC_Os04g49650Os.12323.2.S1_at11/114+29386589..29388086expressed protein
LOC_Os04g49650Os.12323.1.S1_at11/114+29386589..29388086expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54732.1.S1_at--703--2451Chr04:29359441..29359590 (25 bp)
AAAATTGCAGCCTTTCTTGGTCACA
LOC_Os04g49590
Os.54732.1.S1_at--638--7811Chr04:29359423..29359447 (25 bp)
GGTCACACCAATAAAACGTCCTTAT
LOC_Os04g49590
Os.54732.1.S1_at--540--5511Chr04:29359381..29359405 (25 bp)
GAAAATGGTGAAGCCCGCCGAAAGC
LOC_Os04g49590
Os.54732.1.S1_at--627--8891Chr04:29359293..29359317 (25 bp)
TGAAAGGTCGCGGTAAGTTTTGCCA
LOC_Os04g49590
Os.54732.1.S1_at--727--10291Chr04:29359275..29359299 (25 bp)
TTTGCCAAACACTTCGGAGATCCTT
LOC_Os04g49590
Os.54732.1.S1_at--1096--6631Chr04:29359234..29359258 (25 bp)
GTTGCCGGACCGCTCTGGAAAAATA
LOC_Os04g49590
Os.54732.1.S1_at--685--9911Chr04:29359159..29359183 (25 bp)
TACCGAACGGGCCTTCAGACTTCAG
LOC_Os04g49590
Os.54732.1.S1_at--817--2911Chr04:29359105..29359129 (25 bp)
AAGGAGTGCCTGCTTCTTCAAGGAA
LOC_Os04g49590
Os.54732.1.S1_at--520--1971Chr04:29359079..29359103 (25 bp)
ACTGAAGCAATTACACCGTCTTGAA
LOC_Os04g49590
Os.54732.1.S1_at--940--2751Chr04:29359050..29359074 (25 bp)
AAGACTGCTGCAATGGATCTGTCAA
LOC_Os04g49590
Os.54732.1.S1_at--565--2291Chr04:29358898..29358922 (25 bp)
AAATGAATGGCCTAGTCTCGCGATT
LOC_Os04g49590
Target Sequence 
AAAATTGCAGCCTTTCTTGGTCACACCAATAAAACGTCCTTATGGACAGCAAAAAGAAATGAAAATGGTGAAGCCCGCCG
AAAGCGCTCTGCCTTCCCCCCGAAAGAACCTTCAGCTAAACATCTAAACAGTGTGACGAGATTCTGATTGAAAGGTCGCG
GTAAGTTTTGCCAAACACTTCGGAGATCCTTGACAATATAGAGCGGAGTTGCCGGACCGCTCTGGAAAAATACACTACAA
GGATGGAGCGGCCTTAGCACTGCTCCTCAGCTCCGCTGGCTGTACCGAACGGGCCTTCAGACTTCAGTGACAACCAGCTT
CATTTGGCTACGAGAAAAGGAGTGCCTGCTTCTTCAAGGAAAACTGAAGCAATTACACCGTCTTGAAAAGCAAGACTGCT
GCAATGGATCTGTCAAGAGTAAAATGGAAAAAAAAGAATGTATATCCTGGTTGATTTCATAGGTAAGTTTGAAAACTGGA
TGCTCTTTTTTTTCCTGTGTTAGAACAATTTTGTTAGATGGATAGATGTATGAAATATGAAAAAAATGAATGGCCTAGTC
TCGCGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54732.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis