Browse Element(s) Details


Os.54743.1.S1_at

Description gb:AK106649.1
DB_XREF= gi:32991858
TID=Os.54743.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54743 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-113-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-F07, full insert sequence.
FL= gb:AK106649.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1544011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15410Os.23308.1.A1_at11/113+8408380..8412584expressed protein
LOC_Os03g15420Os.51890.1.S1_at11/113+8413842..8416248dynamin family protein, putative, expressed
LOC_Os03g15430Os.21461.1.S1_at10/113+8416414..8420959Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g15440Os.54743.1.S1_at11/113+8437184..8440119Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g15450OsAffx.447.1.S1_at5/113+8452423..8456975retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g15450OsAffx.22947.2.S1_x_at1/113+8452423..8456975retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54743.1.S1_at--318--5871Chr03:8439791..8439815 (25 bp)
GAGCCTCTCGGCGATCCTAGAGAAC
LOC_Os03g15440
Os.54743.1.S1_at--822--5491Chr03:8439812..8439836 (25 bp)
GAACAGGTCTATCTAAGCAAGCATC
LOC_Os03g15440
Os.54743.1.S1_at--563--2131Chr03:8439903..8439927 (25 bp)
ACAGTCCACACTATCTCAAAGCTGA
LOC_Os03g15440
Os.54743.1.S1_at--88--8831Chr03:8439925..8439949 (25 bp)
TGATCATAATACCATGCAGCTAGCT
LOC_Os03g15440
Os.54743.1.S1_at--315--6551Chr03:8439955..8439979 (25 bp)
GATTATGGATCACATGTTCCCCAAG
LOC_Os03g15440
Os.54743.1.S1_at--25--10591Chr03:8440012..8440036 (25 bp)
TTCTCTCCCATTGATTTTATACTAG
LOC_Os03g15440
Os.54743.1.S1_at--335--7011Chr03:8440036..8440060 (25 bp)
GTACTGCTTTGTGTGTGTGAATCTT
LOC_Os03g15440
Os.54743.1.S1_at--112--7471Chr03:8440050..8440074 (25 bp)
GTGTGAATCTTGGTGCTGTATATCT
LOC_Os03g15440
Os.54743.1.S1_at--989--4731Chr03:8440064..8440088 (25 bp)
GCTGTATATCTGCATGGCATCTCTC
LOC_Os03g15440
Os.54743.1.S1_at--962--4991Chr03:8440075..8440099 (25 bp)
GCATGGCATCTCTCAGCAATCAATA
LOC_Os03g15440
Os.54743.1.S1_at--127--3191Chr03:8440095..8440119 (25 bp)
CAATACAAGGCCACACTCTTTGTTC
LOC_Os03g15440
Target Sequence 
GAGCCTCTCGGCGATCCTAGAGAACAGGTCTATCTAAGCAAGCATCCACACATGATGAGATGTGCAAAACGAAACGAAAA
AAAAAAACAGTAAAAACAACGTACACCACACCACAGTCCACACTATCTCAAAGCTGATCATAATACCATGCAGCTAGCTA
GCTAGATTATGGATCACATGTTCCCCAAGTACAACCGTTTTCCATTTCTTTAATTTTAGTTTTCTCTCCCATTGATTTTA
TACTAGTACTGCTTTGTGTGTGTGAATCTTGGTGCTGTATATCTGCATGGCATCTCTCAGCAATCAATACAAGGCCACAC
TCTTTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54743.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis