Browse Element(s) Details


Os.21461.1.S1_at

Description gb:AK066143.1
DB_XREF= gi:32976161
TID=Os.21461.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.21461 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013059J10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013059J10, full insert sequence.
FL= gb:AK066143.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1543010/11Ser/Thr protein phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15370OsAffx.30103.1.S1_s_at11/113+8388987..8391428Ubiquitin, putative, expressed
LOC_Os03g15370OsAffx.30103.5.S1_s_at11/113+8388987..8391428Ubiquitin, putative, expressed
LOC_Os03g15380Os.55672.1.S1_at11/113+8392251..8394017expressed protein
LOC_Os03g15380OsAffx.25098.1.S1_s_at11/113+8392251..8394017expressed protein
LOC_Os03g15390OsAffx.12874.1.S1_at11/113+8394761..8397985expressed protein
LOC_Os03g15400NANA3+8402316..8403137transposon protein, putative, unclassified
LOC_Os03g15410Os.23308.1.A1_at11/113+8408380..8412584expressed protein
LOC_Os03g15420Os.51890.1.S1_at11/113+8413842..8416248dynamin family protein, putative, expressed
LOC_Os03g15430Os.21461.1.S1_at10/113+8416414..8420959Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g15440Os.54743.1.S1_at11/113+8437184..8440119Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21461.1.S1_at--33--8591Chr03:8417050..8417074 (25 bp)
TGGTTATTACACTGCCTTTCCTATA
LOC_Os03g15430
Os.21461.1.S1_at--630--8811Chr03:8416971..8416995 (25 bp)
TGTTGCTTGTTTGCGGCACAGCAGA
LOC_Os03g15430
Os.21461.1.S1_at--826--9611Chr03:8416880..8416904 (25 bp)
TCAGTGTCTTTAGCGAACCTCTCAG
LOC_Os03g15430
Os.21461.1.S1_at--72--9771Chr03:8416834..8416858 (25 bp)
TAATGAAATTCTGTGGCGGCTGGAC
LOC_Os03g15430
Os.21461.1.S1_at--619--10791Chr03:8416793..8416817 (25 bp)
TTGTTGTGCTGTATCATTGCGGTGA
LOC_Os03g15430
Os.21461.1.S1_at--612--4671Chr03:8416696..8416799 (25 bp)
GCGGTGATACATTTGAAGCTTTCCT
LOC_Os03g15430
Os.21461.1.S1_at--464--5391NONE
GAAGCTTTCCTCAAGGCTAATGTCA
NONE
Os.21461.1.S1_at--56--8531Chr03:8416652..8416676 (25 bp)
TGGAGCCAAACCAGTAGCCTTTTCT
LOC_Os03g15430
Os.21461.1.S1_at--1087--10371Chr03:8416633..8416657 (25 bp)
TTTTCTCCTCCAGTAACGTGGATGC
LOC_Os03g15430
Os.21461.1.S1_at--463--3991Chr03:8416617..8416641 (25 bp)
CGTGGATGCCGTTGTTATTATTAAG
LOC_Os03g15430
Os.21461.1.S1_at--623--4851Chr03:8416591..8416615 (25 bp)
GCTACTGCCTATTGTACAATGCCCA
LOC_Os03g15430
Target Sequence 
TGGTTATTACACTGCCTTTCCTATACCTGGTGGTTGTCCCNGTTGTAGTTGTAATATATAGTTTGTTTGCAGAGAAGGCT
GTTGCTTGTTTGCGGCACAGCAGAAGAACAGAAAACACGGTCAACCCAACAAATTCAAACCCTGAGTCANGATATCTACT
GCCAAGTGCTTCAGTGTCTTTAGCGAACCTCTCAGACAAGAAAATTCTCTCAATGGTAATGAAATTCTGTGGCGGCTGGA
CAAGGAGGGTGCTCCTATTGTTGTGCTGTATCATTGCGGTGATACATTTGAAGCTTTCCTCAAGGCTAATGTCAGCTTAT
GGAGCCAAACCAGTAGCCTTTTCTCCTCCAGTAACGTGGATGCCGTTGTTATTATTAAGTGCTACTGCCTATTGTACAAT
GCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21461.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis