Browse Element(s) Details


OsAffx.30103.1.S1_s_at

Description tigr:9631.m01483
TID=OsAffx.30103.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ubiquitin fusion protein - fission yeast (Schizosaccharomyces pombe)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1537011/11Ubiquitin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15320Os.50468.1.S1_at10/113+8363259..8365140glyoxal oxidase, putative, expressed
LOC_Os03g15330OsAffx.12873.1.S1_at11/113+8365632..8366251expressed protein
LOC_Os03g15340Os.49608.1.S1_at11/113+8375622..8376463Chemocyanin precursor, putative, expressed
LOC_Os03g15350Os.47319.1.S1_at5/113+8377870..8384920Sel-1 homolog precursor, putative, expressed
LOC_Os03g15360OsAffx.25096.1.S1_at11/113+8385906..8387349Leucoanthocyanidin reductase, putative
LOC_Os03g15370OsAffx.30103.1.S1_s_at11/113+8388987..8391428Ubiquitin, putative, expressed
LOC_Os03g15370OsAffx.30103.5.S1_s_at11/113+8388987..8391428Ubiquitin, putative, expressed
LOC_Os03g15380Os.55672.1.S1_at11/113+8392251..8394017expressed protein
LOC_Os03g15380OsAffx.25098.1.S1_s_at11/113+8392251..8394017expressed protein
LOC_Os03g15390OsAffx.12874.1.S1_at11/113+8394761..8397985expressed protein
LOC_Os03g15400NANA3+8402316..8403137transposon protein, putative, unclassified
LOC_Os03g15410Os.23308.1.A1_at11/113+8408380..8412584expressed protein
LOC_Os03g15420Os.51890.1.S1_at11/113+8413842..8416248dynamin family protein, putative, expressed
LOC_Os03g15430Os.21461.1.S1_at10/113+8416414..8420959Ser/Thr protein phosphatase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006464biological_processprotein modification
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0006512biological_processubiquitin cycle
GO:0009733biological_processresponse to auxin stimulus
GO:0016567biological_processprotein ubiquitination
GO:0042787biological_processprotein ubiquitination during ubiquitin-dependent protein catabolism
GO:0045116biological_processprotein neddylation
GO:0005622cellular_componentintracellular
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30103.1.S1_s_at--796--9591Chr03:8390853..8390877 (25 bp)
TCATCCATCATTCCATCAGTATCAT
LOC_Os03g15370
OsAffx.30103.1.S1_s_at--185--1351Chr03:8390879..8390903 (25 bp)
AGAGTCACCAGCGTTCAAGCGTTAT
LOC_Os03g15370
OsAffx.30103.1.S1_s_at--463--10271Chr03:8390946..8390970 (25 bp)
TTTGACTACTTGTTACTGCCTTGAG
LOC_Os03g15370
OsAffx.30103.1.S1_s_at--564--3871Chr03:8391007..8391031 (25 bp)
CTGTTTCTTTTTCAGCCATGTCAAG
LOC_Os03g15370
OsAffx.30103.1.S1_s_at--555--4951Chr03:8391113..8391137 (25 bp)
GCATAACCATCCCTTAATTTCCATA
LOC_Os03g15370
OsAffx.30103.1.S1_s_at--536--9011Chr03:8391145..8391169 (25 bp)
TGCAATTTGCGATTGGTCTTCCTCG
LOC_Os03g15370
OsAffx.30103.1.S1_s_at--82--9251Chr03:8391164..8391188 (25 bp)
TCCTCGCCGGTCTGAATTGTGATTG
LOC_Os03g15370
OsAffx.30103.1.S1_s_at--215--3751Chr03:8391200..8391224 (25 bp)
CTCAATGTTCTTTGGTGGACCTGCA
LOC_Os03g15370
OsAffx.30103.1.S1_s_at--245--1111Chr03:8391236..8391260 (25 bp)
AGTGATAAGCCAAGCCGTTTCCCTA
LOC_Os03g15370
OsAffx.30103.1.S1_s_at--634--951Chr03:8391292..8391316 (25 bp)
AGGAAAGCACTTTCTGCGGTTCAGC
LOC_Os03g15370
OsAffx.30103.1.S1_s_at--824--5231Chr03:8391327..8391351 (25 bp)
GAATACTTGCTACCCACTGATTTGT
LOC_Os03g15370
Target Sequence 
TCATCCATCATTCCATCAGTATCATCAGAGTCACCAGCGTTCAAGCGTTATCAAAGCTAAAGTTCCTACTGGATGCCGAA
TCTAGACTATTACTTTGACTACTTGTTACTGCCTTGAGTAATAAGCACTTGTTACCTAGTACTTTATGTGCTAGCTGTTT
CTTTTTCAGCCATGTCAAGTTTGCTGGATGTTGAATCTTGACTAAACCTTTTGGGGACGGTTAATAGCAAGCATGCATAG
TAGGTGGAAGTAACATGGAGGCATAACCATCCCTTAATTTCCATATTTTTTTTGCAATTTGCGATTGGTCTTCCTCGCCG
GTCTGAATTGTGATTGGTCTTCAATAGCTCAATGTTCTTTGGTGGACCTGCATATGACATAGCAGTGATAAGCCAAGCCG
TTTCCCTACAAGCACGCATGTTTCTATTAACACCCTACAAGGAAAGCACTTTCTGCGGTTCAGCCTCCGAACTAGAATAC
TTGCTACCCACTGATTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30103.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis