Browse Element(s) Details


OsAffx.12874.1.S1_at

Description tigr:9631.m01485
TID=OsAffx.12874.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1539011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15340Os.49608.1.S1_at11/113+8375622..8376463Chemocyanin precursor, putative, expressed
LOC_Os03g15350Os.47319.1.S1_at5/113+8377870..8384920Sel-1 homolog precursor, putative, expressed
LOC_Os03g15360OsAffx.25096.1.S1_at11/113+8385906..8387349Leucoanthocyanidin reductase, putative
LOC_Os03g15370OsAffx.30103.1.S1_s_at11/113+8388987..8391428Ubiquitin, putative, expressed
LOC_Os03g15370OsAffx.30103.5.S1_s_at11/113+8388987..8391428Ubiquitin, putative, expressed
LOC_Os03g15380Os.55672.1.S1_at11/113+8392251..8394017expressed protein
LOC_Os03g15380OsAffx.25098.1.S1_s_at11/113+8392251..8394017expressed protein
LOC_Os03g15390OsAffx.12874.1.S1_at11/113+8394761..8397985expressed protein
LOC_Os03g15400NANA3+8402316..8403137transposon protein, putative, unclassified
LOC_Os03g15410Os.23308.1.A1_at11/113+8408380..8412584expressed protein
LOC_Os03g15420Os.51890.1.S1_at11/113+8413842..8416248dynamin family protein, putative, expressed
LOC_Os03g15430Os.21461.1.S1_at10/113+8416414..8420959Ser/Thr protein phosphatase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12874.1.S1_at--1075--10211Chr03:8396544..8396568 (25 bp)
TATTGCCTCCATTTCATGCAGATGA
LOC_Os03g15390
OsAffx.12874.1.S1_at--1127--3111Chr03:8396520..8396544 (25 bp)
AATTTGTCAATGGTCTGGCTGCTAG
LOC_Os03g15390
OsAffx.12874.1.S1_at--1051--3251Chr03:8396308..8396332 (25 bp)
CAACTTTATGCCTTGGTTCCGGCAA
LOC_Os03g15390
OsAffx.12874.1.S1_at--714--8271Chr03:8396243..8396267 (25 bp)
GGCAGGCTCGCATGAATGTTGACAT
LOC_Os03g15390
OsAffx.12874.1.S1_at--264--10231Chr03:8396164..8396188 (25 bp)
TATTGAGCGGTATCTTCTACGTGAG
LOC_Os03g15390
OsAffx.12874.1.S1_at--747--1071Chr03:8394997..8395021 (25 bp)
AGGGAGACCTCCGAGCAGCATTCAG
LOC_Os03g15390
OsAffx.12874.1.S1_at--740--3391Chr03:8394982..8395006 (25 bp)
CAGCATTCAGTGTCCTCCCAAAGGA
LOC_Os03g15390
OsAffx.12874.1.S1_at--412--9831Chr03:8394930..8394954 (25 bp)
TAAAAGGGCTTTGCTGCTTCAAGGT
LOC_Os03g15390
OsAffx.12874.1.S1_at--24--6791Chr03:8394885..8394909 (25 bp)
GTTAGATGGCATTGTCTCCCAGACA
LOC_Os03g15390
OsAffx.12874.1.S1_at--303--8751Chr03:8394856..8394880 (25 bp)
TGTAGCACTTTGTTTTCCCTGTAAA
LOC_Os03g15390
OsAffx.12874.1.S1_at--876--10831Chr03:8394822..8394846 (25 bp)
TTGTGATTCTTTTGCCCCACATATA
LOC_Os03g15390
Target Sequence 
TATTGCCTCCATTTCATGCAGATGAATTTGTCAATGGTCTGGCTGCTAGAGGTGCAGGGAAATTTTTGTCCAAAAGGATG
AAGTCCAATTGGTTGGACCTGTATAGGAGATTTTTGGAAGGTCCCAACTTTATGCCTTGGTTCCGGCAAAGGCGTGCTGC
AGCAGAGCAAGAACAGCAGAGGCTCTGGAGGCAGGCTCGCATGAATGTTGACATTGAAAAGCTAATGTCAAAGTTGTCTG
AATTGGAGAGAATTGATTCTTTTAATGCTATTGAGCGGTATCTTCTACGTGAGATGGAGAATTCTAGAACAGGTGCTACT
GAATCAGTAACAGTGTGTGAGAAATTGAAGGGAGACCTCCGAGCAGCATTCAGTGTCCTCCCAAAGGACATGCAGCAACT
CCTGCTCTCTAACCCTAAAAGGGCTTTGCTGCTTCAAGGTAGCAACGAAAAGATCCCAGGGTTAGATGGCATTGTCTCCC
AGACAAGTTTGTAGCACTTTGTTTTCCCTGTAAAAATACTTTTTTGTGATTCTTTTGCCCCACATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12874.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis