Browse Element(s) Details


OsAffx.25098.1.S1_s_at

Description tigr:9631.m01484
TID=OsAffx.25098.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1538011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15340Os.49608.1.S1_at11/113+8375622..8376463Chemocyanin precursor, putative, expressed
LOC_Os03g15350Os.47319.1.S1_at5/113+8377870..8384920Sel-1 homolog precursor, putative, expressed
LOC_Os03g15360OsAffx.25096.1.S1_at11/113+8385906..8387349Leucoanthocyanidin reductase, putative
LOC_Os03g15370OsAffx.30103.1.S1_s_at11/113+8388987..8391428Ubiquitin, putative, expressed
LOC_Os03g15370OsAffx.30103.5.S1_s_at11/113+8388987..8391428Ubiquitin, putative, expressed
LOC_Os03g15380Os.55672.1.S1_at11/113+8392251..8394017expressed protein
LOC_Os03g15380OsAffx.25098.1.S1_s_at11/113+8392251..8394017expressed protein
LOC_Os03g15390OsAffx.12874.1.S1_at11/113+8394761..8397985expressed protein
LOC_Os03g15400NANA3+8402316..8403137transposon protein, putative, unclassified
LOC_Os03g15410Os.23308.1.A1_at11/113+8408380..8412584expressed protein
LOC_Os03g15420Os.51890.1.S1_at11/113+8413842..8416248dynamin family protein, putative, expressed
LOC_Os03g15430Os.21461.1.S1_at10/113+8416414..8420959Ser/Thr protein phosphatase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25098.1.S1_s_at--304--8291Chr03:8393081..8393105 (25 bp)
GGCATACGAACAGTTCAACCGCCTT
LOC_Os03g15380
OsAffx.25098.1.S1_s_at--477--10651Chr03:8393104..8393128 (25 bp)
TTCCCCGGTCAGAGAGCTCGGATTC
LOC_Os03g15380
OsAffx.25098.1.S1_s_at--335--6011Chr03:8393115..8393139 (25 bp)
GAGAGCTCGGATTCGAGTTCGACGA
LOC_Os03g15380
OsAffx.25098.1.S1_s_at--1143--4051Chr03:8393128..8393152 (25 bp)
CGAGTTCGACGAGCAAAGGAGACAG
LOC_Os03g15380
OsAffx.25098.1.S1_s_at--345--2311Chr03:8393142..8393166 (25 bp)
AAAGGAGACAGGTCGGATTCGAGTT
LOC_Os03g15380
OsAffx.25098.1.S1_s_at--301--5651Chr03:8393148..8393172 (25 bp)
GACAGGTCGGATTCGAGTTCGACGA
LOC_Os03g15380
OsAffx.25098.1.S1_s_at--1144--4051Chr03:8393161..8393185 (25 bp)
CGAGTTCGACGAGCAAAAGAGACAT
LOC_Os03g15380
OsAffx.25098.1.S1_s_at--598--5931Chr03:8393171..8393195 (25 bp)
GAGCAAAAGAGACATCGCCCCGGCA
LOC_Os03g15380
OsAffx.25098.1.S1_s_at--1078--3271Chr03:8393174..8393198 (25 bp)
CAAAAGAGACATCGCCCCGGCAAAT
LOC_Os03g15380
OsAffx.25098.1.S1_s_at--216--531Chr03:8393184..8393208 (25 bp)
ATCGCCCCGGCAAATGTCAAAACAG
LOC_Os03g15380
OsAffx.25098.1.S1_s_at--277--9331Chr03:8393185..8393209 (25 bp)
TCGCCCCGGCAAATGTCAAAACAGT
LOC_Os03g15380
Target Sequence 
GGCATACGAACAGTTCAACCGCCTTCCCCGGTCAGAGAGCTCGGATTCGAGTTCGACGAGCAAAGGAGACAGGTCGGATT
CGAGTTCGACGAGCAAAAGAGACATCGCCCCGGCAAATGTCAAAACAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25098.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis