Browse Element(s) Details


OsAffx.25096.1.S1_at

Description tigr:9631.m01481
TID=OsAffx.25096.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to leucoanthocyanidin reductase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1536011/11Leucoanthocyanidin reductase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15320Os.50468.1.S1_at10/113+8363259..8365140glyoxal oxidase, putative, expressed
LOC_Os03g15330OsAffx.12873.1.S1_at11/113+8365632..8366251expressed protein
LOC_Os03g15340Os.49608.1.S1_at11/113+8375622..8376463Chemocyanin precursor, putative, expressed
LOC_Os03g15350Os.47319.1.S1_at5/113+8377870..8384920Sel-1 homolog precursor, putative, expressed
LOC_Os03g15360OsAffx.25096.1.S1_at11/113+8385906..8387349Leucoanthocyanidin reductase, putative
LOC_Os03g15370OsAffx.30103.1.S1_s_at11/113+8388987..8391428Ubiquitin, putative, expressed
LOC_Os03g15370OsAffx.30103.5.S1_s_at11/113+8388987..8391428Ubiquitin, putative, expressed
LOC_Os03g15380Os.55672.1.S1_at11/113+8392251..8394017expressed protein
LOC_Os03g15380OsAffx.25098.1.S1_s_at11/113+8392251..8394017expressed protein
LOC_Os03g15390OsAffx.12874.1.S1_at11/113+8394761..8397985expressed protein
LOC_Os03g15400NANA3+8402316..8403137transposon protein, putative, unclassified
LOC_Os03g15410Os.23308.1.A1_at11/113+8408380..8412584expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25096.1.S1_at--466--5731Chr03:8386443..8386558 (25 bp)
GACGGCGACGTCAGAGCTTTCTTCG
LOC_Os03g15360
OsAffx.25096.1.S1_at--715--7051Chr03:8386400..8386424 (25 bp)
GTAAGTTCACCATCAGGGCTGCCTA
LOC_Os03g15360
OsAffx.25096.1.S1_at--35--9951Chr03:8386377..8386401 (25 bp)
TACGACGCCCGGAGCATCAACAAGA
LOC_Os03g15360
OsAffx.25096.1.S1_at--136--871Chr03:8386151..8386171 (21 bp)
ATGGCTGCAGATGACATCATCCCGG
LOC_Os03g15360
OsAffx.25096.1.S1_at--1131--1351Chr03:8386126..8386150 (25 bp)
AGAGCATAGTCGCTTCACTGACGCA
LOC_Os03g15360
OsAffx.25096.1.S1_at--192--1931Chr03:8386087..8386111 (25 bp)
ACGGTTGCCAGACACATTTCTACAT
LOC_Os03g15360
OsAffx.25096.1.S1_at--236--10011Chr03:8386063..8386087 (25 bp)
TAGACGGGCCTAGAGACATTGAAAT
LOC_Os03g15360
OsAffx.25096.1.S1_at--1111--10371Chr03:8386045..8386069 (25 bp)
TTGAAATCTCAAGCCTTTACCCTGA
LOC_Os03g15360
OsAffx.25096.1.S1_at--750--10331Chr03:8386030..8386054 (25 bp)
TTTACCCTGATATTCCCTTCAGAAC
LOC_Os03g15360
OsAffx.25096.1.S1_at--124--291Chr03:8386004..8386028 (25 bp)
ATAGACGAATGCTTCGACGACTACA
LOC_Os03g15360
OsAffx.25096.1.S1_at--463--9871Chr03:8385983..8386007 (25 bp)
TACATACATGTCCTCAACCTAGCAG
LOC_Os03g15360
Target Sequence 
GACGGCGACGTCAGAGCTTTCTTCGTGGCTGGAAGCGACATTGGTAAGTTCACCATCAGGGCTGCCTACGACGCCCGGAG
CATCAACAAGATCGTGCACTTCCGTCCCGCCTGCAATCTCCTCAGCACGAACGAGATGGCGTCGCTGTGGGAGAGCAAGA
TCGGCCGGACACTGCCACGCGTGACGCTTACCGAGGAGGACTTGATCGCCATGGCTGCAGATGACATCATCCCGGAGAGC
ATAGTCGCTTCACTGACGCATGACATTTTTATAAACGGTTGCCAGACACATTTCTACATAGACGGGCCTAGAGACATTGA
AATCTCAAGCCTTTACCCTGATATTCCCTTCAGAACAATAGACGAATGCTTCGACGACTACATACATGTCCTCAACCTAG
CAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25096.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis