Browse Element(s) Details


Os.50468.1.S1_at

Description gb:AK121313.1
DB_XREF= gi:37990936
TID=Os.50468.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50468 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023112O15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023112O15, full insert sequence.
FL= gb:AK121313.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1532010/11glyoxal oxidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15280NANA3+8340170..8340385hypothetical protein
LOC_Os03g15290Os.24872.2.S1_at1/113+8348400..8350031Autophagy protein Apg6 containing protein, expressed
LOC_Os03g15300OsAffx.3249.1.S1_at10/113+8350450..8351682expressed protein
LOC_Os03g15310Os.53217.1.S1_x_at4/113+8357062..8359121transposon protein, putative, unclassified
LOC_Os03g15310Os.38172.1.S1_x_at3/113+8357062..8359121transposon protein, putative, unclassified
LOC_Os03g15310Os.43567.1.S1_x_at3/113+8357062..8359121transposon protein, putative, unclassified
LOC_Os03g15310Os.29987.1.S1_at1/113+8357062..8359121transposon protein, putative, unclassified
LOC_Os03g15320Os.50468.1.S1_at10/113+8363259..8365140glyoxal oxidase, putative, expressed
LOC_Os03g15330OsAffx.12873.1.S1_at11/113+8365632..8366251expressed protein
LOC_Os03g15340Os.49608.1.S1_at11/113+8375622..8376463Chemocyanin precursor, putative, expressed
LOC_Os03g15350Os.47319.1.S1_at5/113+8377870..8384920Sel-1 homolog precursor, putative, expressed
LOC_Os03g15360OsAffx.25096.1.S1_at11/113+8385906..8387349Leucoanthocyanidin reductase, putative
LOC_Os03g15370OsAffx.30103.1.S1_s_at11/113+8388987..8391428Ubiquitin, putative, expressed
LOC_Os03g15370OsAffx.30103.5.S1_s_at11/113+8388987..8391428Ubiquitin, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50468.1.S1_at--765--8911Chr03:8364664..8364688 (25 bp)
TGAGCGTGACCTACGGTGCGTCGTT
LOC_Os03g15320
Os.50468.1.S1_at--875--9391Chr03:8364684..8364708 (25 bp)
TCGTTGACGTTGCAGTTCGCGGTTC
LOC_Os03g15320
Os.50468.1.S1_at--574--7451Chr03:8364759..8364783 (25 bp)
GTGTCAGTCACGATGGTCGCGCCGT
LOC_Os03g15320
Os.50468.1.S1_at--258--6711Chr03:8364800..8364824 (25 bp)
GTTCGCGATGAACCAGAGGCTGCTA
LOC_Os03g15320
Os.50468.1.S1_at--390--9971Chr03:8364870..8364894 (25 bp)
TACCAGACATCCGTGGTGATGCCGG
LOC_Os03g15320
Os.50468.1.S1_at--332--8311Chr03:8364918..8364942 (25 bp)
GGCTACTACATGGTGTTCGTGGTGA
LOC_Os03g15320
Os.50468.1.S1_at--415--8611Chr03:8364937..8364961 (25 bp)
TGGTGAATGGCCACATCCCAAGCGA
LOC_Os03g15320
Os.50468.1.S1_at--603--7971Chr03:8364964..8364988 (25 bp)
GGATCTGGGTCCACATACAGTGACA
LOC_Os03g15320
Os.50468.1.S1_at--1142--6951Chr03:8365035..8365059 (25 bp)
GTACCATTTTAATCTGTTGTCACCA
LOC_Os03g15320
Os.50468.1.S1_at--343--8691Chr03:8365072..8365096 (25 bp)
TGTGACACTGTGACTGTTACCGCTT
LOC_Os03g15320
Os.50468.1.S1_at--1158--3851NONE
CTGTTACCGCTTGCATGAGACTGTA
NONE
Target Sequence 
TGAGCGTGACCTACGGTGCGTCGTTGACGTTGCAGTTCGCGGTTCCGGCGGCGAGGAGAGCGCGCGGCGGCGGCGGCGGC
GGCGGCATCGGGCTCGTGTCAGTCACGATGGTCGCGCCGTCGTTCACGACGCACTCGTTCGCGATGAACCAGAGGCTGCT
ACTCCTCGACGCCGTGAAGACGGCGGCGCTGGCACGGGCCAGCACCTACCAGACATCCGTGGTGATGCCGGCGACGGCGG
CCTTGGCGCCGCCGGGCTACTACATGGTGTTCGTGGTGAATGGCCACATCCCAAGCGAAGGGATCTGGGTCCACATACAG
TGACACTGACAGGGGGTATAGCTGCAAGGGCAAGACTGTAGTACAGTACGAGTACCATTTTAATCTGTTGTCACCATACA
GTTGATAGTGTGACACTGTGACTGTTACCGCTTGCATGAGACTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50468.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis