Browse Element(s) Details


Os.49608.1.S1_at

Description gb:AK107381.1
DB_XREF= gi:32992590
TID=Os.49608.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49608 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-127-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-127-C02, full insert sequence.
FL= gb:AK107381.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1534011/11Chemocyanin precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15300OsAffx.3249.1.S1_at10/113+8350450..8351682expressed protein
LOC_Os03g15310Os.53217.1.S1_x_at4/113+8357062..8359121transposon protein, putative, unclassified
LOC_Os03g15310Os.38172.1.S1_x_at3/113+8357062..8359121transposon protein, putative, unclassified
LOC_Os03g15310Os.43567.1.S1_x_at3/113+8357062..8359121transposon protein, putative, unclassified
LOC_Os03g15310Os.29987.1.S1_at1/113+8357062..8359121transposon protein, putative, unclassified
LOC_Os03g15320Os.50468.1.S1_at10/113+8363259..8365140glyoxal oxidase, putative, expressed
LOC_Os03g15330OsAffx.12873.1.S1_at11/113+8365632..8366251expressed protein
LOC_Os03g15340Os.49608.1.S1_at11/113+8375622..8376463Chemocyanin precursor, putative, expressed
LOC_Os03g15350Os.47319.1.S1_at5/113+8377870..8384920Sel-1 homolog precursor, putative, expressed
LOC_Os03g15360OsAffx.25096.1.S1_at11/113+8385906..8387349Leucoanthocyanidin reductase, putative
LOC_Os03g15370OsAffx.30103.1.S1_s_at11/113+8388987..8391428Ubiquitin, putative, expressed
LOC_Os03g15370OsAffx.30103.5.S1_s_at11/113+8388987..8391428Ubiquitin, putative, expressed
LOC_Os03g15380Os.55672.1.S1_at11/113+8392251..8394017expressed protein
LOC_Os03g15380OsAffx.25098.1.S1_s_at11/113+8392251..8394017expressed protein
LOC_Os03g15390OsAffx.12874.1.S1_at11/113+8394761..8397985expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009856biological_processpollination
GO:0048653biological_processanther development
GO:0031225cellular_componentanchored to membrane
GO:0048196cellular_componentextracellular matrix (sensu Magnoliophyta)
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49608.1.S1_at--470--4251Chr03:8375856..8375989 (25 bp)
CCGGTGACGTCCTTGTGTTCAGCTA
LOC_Os03g15340
Os.49608.1.S1_at--638--10831Chr03:8375979..8376001 (23 bp)
TTGTGTTCAGCTACGACCCGTCCGT
LOC_Os03g15340
Os.49608.1.S1_at--112--1851Chr03:8375989..8376013 (25 bp)
ACGACCCGTCCGTGCACAACGTGGT
LOC_Os03g15340
Os.49608.1.S1_at--933--4231Chr03:8376044..8376068 (25 bp)
CCGGGAGTCCGGCACCAAGTACAGC
LOC_Os03g15340
Os.49608.1.S1_at--987--8411Chr03:8376093..8376117 (25 bp)
GGCCGCGGCACGAGCTACTTCATCT
LOC_Os03g15340
Os.49608.1.S1_at--247--4131Chr03:8376140..8376164 (25 bp)
CGCAGGGATGAAGATGGCCGTCACC
LOC_Os03g15340
Os.49608.1.S1_at--745--2591Chr03:8376184..8376208 (25 bp)
AACGCAGCACAAAAGCAGGGCCAGG
LOC_Os03g15340
Os.49608.1.S1_at--178--4531Chr03:8376214..8376238 (25 bp)
GCCGCTCTAGCCTGTAGCTATACAT
LOC_Os03g15340
Os.49608.1.S1_at--985--7871Chr03:8376302..8376326 (25 bp)
GGTTTTGTTGTCATAGTGCGTCGCA
LOC_Os03g15340
Os.49608.1.S1_at--594--6111Chr03:8376383..8376407 (25 bp)
GAGTGATGTGTGCTTGTATGTATTA
LOC_Os03g15340
Os.49608.1.S1_at--915--7031Chr03:8376432..8376456 (25 bp)
GTAAAGCACATCAGCTTGTTTGTTT
LOC_Os03g15340
Target Sequence 
CCGGTGACGTCCTTGTGTTCAGCTACGACCCGTCCGTGCACAACGTGGTGGCGGTGGACGCCGGCGGCTACAGCGGCTGC
CGGGAGTCCGGCACCAAGTACAGCTCCGGGNACGACCGCATCACGCTCGGCCGCGGCACGAGCTACTTCATCTGCAGCTT
NTCCGGCCACTGTGGCGCAGGGATGAAGATGGCCGTCACCGNCAGCTGAAGAGGAAGCCAACGCAGCACAAAAGCAGGGC
CAGGCTGCTGCCGCTCTAGCCTGTAGCTATACATATTNNACATGTGTNGNCCGAACAGNAATAATAAGAGGCAGNAGCCA
GCACCGCGTNATNGTGCAGGTTTTGTTGTCATAGTGCGTCGCAAACAATATATACAGCCATATATGTGTGTTATGTAGGG
AGAGTGGTAGGTGAGGCATGAGTGATGTGTGCTTGTATGTATTATCAGAAGTCAGGAGTTGATTACTAGTAAAGCACATC
AGCTTGTTTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49608.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis