Browse Element(s) Details


OsAffx.12873.1.S1_at

Description tigr:9631.m01478
TID=OsAffx.12873.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1533011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15290Os.24872.2.S1_at1/113+8348400..8350031Autophagy protein Apg6 containing protein, expressed
LOC_Os03g15300OsAffx.3249.1.S1_at10/113+8350450..8351682expressed protein
LOC_Os03g15310Os.53217.1.S1_x_at4/113+8357062..8359121transposon protein, putative, unclassified
LOC_Os03g15310Os.38172.1.S1_x_at3/113+8357062..8359121transposon protein, putative, unclassified
LOC_Os03g15310Os.43567.1.S1_x_at3/113+8357062..8359121transposon protein, putative, unclassified
LOC_Os03g15310Os.29987.1.S1_at1/113+8357062..8359121transposon protein, putative, unclassified
LOC_Os03g15320Os.50468.1.S1_at10/113+8363259..8365140glyoxal oxidase, putative, expressed
LOC_Os03g15330OsAffx.12873.1.S1_at11/113+8365632..8366251expressed protein
LOC_Os03g15340Os.49608.1.S1_at11/113+8375622..8376463Chemocyanin precursor, putative, expressed
LOC_Os03g15350Os.47319.1.S1_at5/113+8377870..8384920Sel-1 homolog precursor, putative, expressed
LOC_Os03g15360OsAffx.25096.1.S1_at11/113+8385906..8387349Leucoanthocyanidin reductase, putative
LOC_Os03g15370OsAffx.30103.1.S1_s_at11/113+8388987..8391428Ubiquitin, putative, expressed
LOC_Os03g15370OsAffx.30103.5.S1_s_at11/113+8388987..8391428Ubiquitin, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12873.1.S1_at--280--5151Chr03:8366165..8366189 (25 bp)
GCAACAACAGTATTGGCGGAGGCAA
LOC_Os03g15330
OsAffx.12873.1.S1_at--954--4351Chr03:8366135..8366159 (25 bp)
CCAGCGGTGACGAGGATGAGCACAA
LOC_Os03g15330
OsAffx.12873.1.S1_at--752--1491Chr03:8366117..8366141 (25 bp)
AGCACAAGGACGACGCAGTGCGCCG
LOC_Os03g15330
OsAffx.12873.1.S1_at--349--4531Chr03:8366090..8366114 (25 bp)
GCCGCCATGGATTGGGCCCCTGCTT
LOC_Os03g15330
OsAffx.12873.1.S1_at--259--9251Chr03:8366033..8366057 (25 bp)
TCCTTGCCGGCTCTTTCATGGTGGT
LOC_Os03g15330
OsAffx.12873.1.S1_at--26--4811Chr03:8366024..8366048 (25 bp)
GCTCTTTCATGGTGGTTGCGACGGC
LOC_Os03g15330
OsAffx.12873.1.S1_at--79--2671Chr03:8365873..8365897 (25 bp)
AAGCGGCGTCGAACGGGCTTCTAGC
LOC_Os03g15330
OsAffx.12873.1.S1_at--1109--9251Chr03:8365794..8365818 (25 bp)
TCCTCGCCACGGTGGATATGAAGGC
LOC_Os03g15330
OsAffx.12873.1.S1_at--818--6491Chr03:8365780..8365804 (25 bp)
GATATGAAGGCGGAGGACCTCACGA
LOC_Os03g15330
OsAffx.12873.1.S1_at--258--971Chr03:8365767..8365791 (25 bp)
AGGACCTCACGACGGTGAACGCCGA
LOC_Os03g15330
OsAffx.12873.1.S1_at--630--9651Chr03:8365761..8365785 (25 bp)
TCACGACGGTGAACGCCGAACTGGA
LOC_Os03g15330
Target Sequence 
GCAACAACAGTATTGGCGGAGGCAATGACGCCAGCGGTGACGAGGATGAGCACAAGGACGACGCAGTGCGCCGCCGCCGC
CATGGATTGGGCCCCTGCTTGCCTCACTGCGAGCCACTCCTCCTCGTTCACCTCCTTGCCGGCTCTTTCATGGTGGTTGC
GACGGCCGGAGGTGGAAGAGGCAGGGCAGTGGCGGGCAGCGGCGACCGTGGAGGAGGAGGGCGACAGTGGAGAGGAGGCA
GAGCGGCAATGGAGGAGGCGGAGCAGCGGCGGCGGCGGTGGCAGAGGAGGCGAAGCGGCGTCGAACGGGCTTCTAGCGGC
GGAGGAGGAGGCGGAGTGGCGGCGATGGAGGCCGAGCAACAGCGAAGGTGCTCCTCGCCACGGTGGATATGAAGGCGGAG
GACCTCACGACGGTGAACGCCGAACTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12873.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis