Browse Element(s) Details


Os.47319.1.S1_at

Description gb:AK109167.1
DB_XREF= gi:32994376
TID=Os.47319.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47319 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-155-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-155-H02, full insert sequence.
FL= gb:AK063394.1 gb:AK109167.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g153505/11Sel-1 homolog precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15310Os.53217.1.S1_x_at4/113+8357062..8359121transposon protein, putative, unclassified
LOC_Os03g15310Os.38172.1.S1_x_at3/113+8357062..8359121transposon protein, putative, unclassified
LOC_Os03g15310Os.43567.1.S1_x_at3/113+8357062..8359121transposon protein, putative, unclassified
LOC_Os03g15310Os.29987.1.S1_at1/113+8357062..8359121transposon protein, putative, unclassified
LOC_Os03g15320Os.50468.1.S1_at10/113+8363259..8365140glyoxal oxidase, putative, expressed
LOC_Os03g15330OsAffx.12873.1.S1_at11/113+8365632..8366251expressed protein
LOC_Os03g15340Os.49608.1.S1_at11/113+8375622..8376463Chemocyanin precursor, putative, expressed
LOC_Os03g15350Os.47319.1.S1_at5/113+8377870..8384920Sel-1 homolog precursor, putative, expressed
LOC_Os03g15360OsAffx.25096.1.S1_at11/113+8385906..8387349Leucoanthocyanidin reductase, putative
LOC_Os03g15370OsAffx.30103.1.S1_s_at11/113+8388987..8391428Ubiquitin, putative, expressed
LOC_Os03g15370OsAffx.30103.5.S1_s_at11/113+8388987..8391428Ubiquitin, putative, expressed
LOC_Os03g15380Os.55672.1.S1_at11/113+8392251..8394017expressed protein
LOC_Os03g15380OsAffx.25098.1.S1_s_at11/113+8392251..8394017expressed protein
LOC_Os03g15390OsAffx.12874.1.S1_at11/113+8394761..8397985expressed protein
LOC_Os03g15400NANA3+8402316..8403137transposon protein, putative, unclassified
LOC_Os03g15410Os.23308.1.A1_at11/113+8408380..8412584expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47319.1.S1_at--993--5611Chr03:8384657..8384681 (25 bp)
GACAACGTCCATACTGTCATACTGG
LOC_Os03g15350
Os.47319.1.S1_at--952--7031Chr03:8384672..8384696 (25 bp)
GTCATACTGGAAAAGCGGGTCCTTC
LOC_Os03g15350
Os.47319.1.S1_at--332--4671Chr03:8384686..8384710 (25 bp)
GCGGGTCCTTCAACTGCAAAATGCT
LOC_Os03g15350
Os.47319.1.S1_at--81--9131Chr03:8384707..8384731 (25 bp)
TGCTGATGGCTTTCTGAGGTTAAAA
LOC_Os03g15350
Os.47319.1.S1_at--555--6491Chr03:8384747..8384771 (25 bp)
GATAGCTCTCCTTGACATCTATGTA
LOC_Os03g15350
Os.47319.1.S1_at--909--7591Chr03:8385184..8385208 (25 bp)
GGGCATGCACTGCAATCAGTCCGGC
NONE
Os.47319.1.S1_at--51--8331Chr03:8385206..8385230 (25 bp)
GGCTCTCAACTTTTCATGGTCAACA
NONE
Os.47319.1.S1_at--334--7091Chr03:8385224..8385248 (25 bp)
GTCAACAACCTGACGACACAATTGT
NONE
Os.47319.1.S1_at--277--3271Chr03:8385282..8385306 (25 bp)
CAAATTTTACCCGTGCTAAGTTGTG
NONE
Os.47319.1.S1_at--497--1971Chr03:8385345..8385369 (25 bp)
ACTGTTAGTTTGTTGCCGTCTTGCA
NONE
Os.47319.1.S1_at--167--5051Chr03:8385367..8385391 (25 bp)
GCAGACTTGTACTTTTATCATCCCC
NONE
Target Sequence 
GACAACGTCCATACTGTCATACTGGAAAAGCGGGTCCTTCAACTGCAAAATGCTGATGGCTTTCTGAGGTTAAAAATCGG
GGTTTAAAATGATAGCTCTCCTTGACATCTATGTACACTAAAATTGACTAGGATAAGAACTGATCATGACTGTTGGATAT
TGAGATCATGTTGTGGGTTCTAACAGAGTAGTGCTTGTAAGTAACGACGGNNGNNNNANNNAANNNNNNNNNCNTNCNTN
NCNTNNNNNNANGGNNTNNATTTNTGTTGACGGGGCATGCACTGCAATCAGTCCGGCTCTCAACTTTTCATGGTCAACAA
CCTGACGACACAATTGTGTGACTAGAGAAGCGTGTTAGTGGGTAGAAGTTCAAATTTTACCCGTGCTAAGTTGTGTTGGT
TGATAAATGATTGTTTTTTTTTTCTCAAATAAGACTGTTAGTTTGTTGCCGTCTTGCAGACTTGTACTTTTATCATCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47319.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis