Browse Element(s) Details


Os.54745.1.S1_at

Description gb:AK106651.1
DB_XREF= gi:32991860
TID=Os.54745.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54745 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-113-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-F10, full insert sequence.
FL= gb:AK106651.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4490011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44870OsAffx.15931.1.S1_s_at11/116+27122728..27123655hypothetical protein
LOC_Os06g44880OsAffx.28109.1.S1_x_at10/116+27125263..27129159Type II intron maturase family protein
LOC_Os06g44890Os.14309.1.S1_at11/116+27134558..27143860Villin-4, putative, expressed
LOC_Os06g44900Os.54745.1.S1_at11/116+27147695..27149753expressed protein
LOC_Os06g44910Os.7152.1.S1_at10/116+27150479..27153089Glutaredoxin family protein, expressed
LOC_Os06g44920NANA6+27153896..27155263F-box domain containing protein
LOC_Os06g44930OsAffx.5108.1.S1_s_at11/116+27161269..27162328expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54745.1.S1_at--1048--91Chr06:27149074..27149098 (25 bp)
ATTCGACTCGACTGAAGCTTACAGG
LOC_Os06g44900
Os.54745.1.S1_at--1100--971Chr06:27149096..27149120 (25 bp)
AGGAGAGCTCTCAAGACCTGGGCTC
LOC_Os06g44900
Os.54745.1.S1_at--666--1771Chr06:27149111..27149135 (25 bp)
ACCTGGGCTCGCTGGATCGACAAGA
LOC_Os06g44900
Os.54745.1.S1_at--128--8531Chr06:27149139..27149163 (25 bp)
TGGACCCGGCCAAGAGTGTCGTCTT
LOC_Os06g44900
Os.54745.1.S1_at--814--8831Chr06:27149339..27149363 (25 bp)
TGATCGGCAGCTACCCGCGGAAGAT
LOC_Os06g44900
Os.54745.1.S1_at--1065--7291Chr06:27149404..27149428 (25 bp)
GTGCGGCTGCTCAACGTGACGAAGC
LOC_Os06g44900
Os.54745.1.S1_at--743--5391Chr06:27149424..27149448 (25 bp)
GAAGCTGACCAACTTCCGCAGGGAC
LOC_Os06g44900
Os.54745.1.S1_at--1046--7511Chr06:27149547..27149571 (25 bp)
GTGGAACGAGCTGATCTACGCGTCC
LOC_Os06g44900
Os.54745.1.S1_at--1017--6611Chr06:27149577..27149601 (25 bp)
GTTGGAACCCAAGCCCAGATCATGG
LOC_Os06g44900
Os.54745.1.S1_at--23--8911Chr06:27149651..27149675 (25 bp)
TGAGCAGTTGAGCTGATGCGCAAAC
LOC_Os06g44900
Os.54745.1.S1_at--332--6151Chr06:27149712..27149736 (25 bp)
GAGGTTTTGCCTTGCTTTTTGAGAT
LOC_Os06g44900
Target Sequence 
ATTCGACTCGACTGAAGCTTACAGGAGAGCTCTCAAGACCTGGGCTCGCTGGATCGACAAGAACATGGACCCGGCCAAGA
GTGTCGTCTTCTACCGAGGCTACTCCACTGCACATTTCAGGGGAGGGGAGTGGGATTCGGGTGGGTCGTGCAGCGGGGAG
AGGGAGCCGACGCTCAGAGGGGCGGTGATCGGCAGCTACCCGCGGAAGATGAGGATCGTGGAGGAGGTGATCGGGAGGAT
GCGGTTCCCGGTGCGGCTGCTCAACGTGACGAAGCTGACCAACTTCCGCAGGGACGGCCACCCGTCGGTGTACGGCAAGG
CGGCGGCGGGGAAGAAGGTGTCGAGGAGGAAGCAGGATTGCAGCCACTGGTGCCTCCCCGGCGTGCCGGACGCGTGGAAC
GAGCTGATCTACGCGTCCCTCGTGTTGGAACCCAAGCCCAGATCATGGAAACACCACTAGTACACTACTTCAGTTTCTTT
TTGTGTTTGTTTCGGTTTGAGCAGTTGAGCTGATGCGCAAACTGAAAATGTGCTTGATGTTTGCTCAATTGAGGACAGGA
GGTTTTGCCTTGCTTTTTGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54745.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis