Browse Element(s) Details


Os.54747.1.S1_at

Description gb:AK106655.1
DB_XREF= gi:32991864
TID=Os.54747.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54747 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-137-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-G04, full insert sequence.
FL= gb:AK106655.1 gb:AK109584.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g207401/11Calcium binding EGF domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20710OsAffx.29946.1.S1_at10/119+12474469..12476640RNA recognition motif family protein
LOC_Os09g20720NANA9+12483351..12483830Strictosidine synthase 1 precursor, putative
LOC_Os09g20730OsAffx.27726.2.S1_at11/119+12484713..12486169hypothetical protein
LOC_Os09g20730Os.55138.1.S1_x_at1/119+12484713..12486169hypothetical protein
LOC_Os09g20740OsAffx.6347.1.S1_at11/119+12493568..12497571Calcium binding EGF domain containing protein
LOC_Os09g20740Os.54747.1.S1_at1/119+12493568..12497571Calcium binding EGF domain containing protein
LOC_Os09g20750OsAffx.6348.1.S1_at11/119+12501624..12502148hypothetical protein
LOC_Os09g20760NANA9+12506674..12508442retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g20770OsAffx.18314.1.S1_at1/119+12511574..12516407hypothetical protein
LOC_Os09g20780OsAffx.29946.1.S1_at5/119+12519956..12520243RNA recognition motif family protein
LOC_Os09g20790OsAffx.6349.1.S1_at11/119+12520761..12520997hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0005886cellular_componentplasma membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54747.1.S1_at--670--4517Chr04:19449798..19449822 (25 bp)
GCCGCATGCGAAAAGGGTGATTTTT
NONE
Os.54747.1.S1_at--1006--10691Chr04:19449846..19449870 (25 bp)
TTGCCCCAACCGCATACAAAGATGC
NONE
Os.54747.1.S1_at--676--2194Chr04:19449861..19449885 (25 bp)
ACAAAGATGCCTTTTGCCCGTATGC
NONE
Os.54747.1.S1_at--57--2811Chr04:19449864..19449888 (25 bp)
AAGATGCCTTTTGCCCGTATGCAAA
NONE
Os.54747.1.S1_at--949--5132Chr04:19449884..19449908 (25 bp)
GCAAAAAGCCTTTCTGTACTAGTGT
NONE
Os.54747.1.S1_at--585--4451Chr04:19449891..19449915 (25 bp)
GCCTTTCTGTACTAGTGTATTTAGA
NONE
Os.54747.1.S1_at--764--10071Chr04:19449903..19449927 (25 bp)
TAGTGTATTTAGAACCAGATGGAGC
NONE
Os.54747.1.S1_at--77--1451Chr04:19449913..19449937 (25 bp)
AGAACCAGATGGAGCTAGCACAAGG
NONE
Os.54747.1.S1_at--687--3431Chr04:19449918..19449942 (25 bp)
CAGATGGAGCTAGCACAAGGTAGTA
NONE
Os.54747.1.S1_at--245--6412Chr04:19450291..19450315 (25 bp)
GTGAACTAAACGTACCCTTTATGTG
NONE
Os.54747.1.S1_at--396--9811Chr04:19450297..19450321 (25 bp)
TAAACGTACCCTTTATGTGTGTAAG
NONE
Target Sequence 
GCCGCATGCGAAAAGGGTGATTTTTGCAGACCCTTCTCCCCCATGCGGTTGCCCCAACCGCATACAAAGATGCCTTTTGC
CCGTATGCAAAAAGCCTTTCTGTACTAGTGTATTTAGAACCAGATGGAGCTAGCACAAGGTAGTAAGGGTGTGTTTAGTT
CACGCTAAAATTAAAAGTTTGATTGAAATTAGAACGATGTGACGGAAAAGTTGAAAGTTTGGCCGAGTTTAGGCCCTGTT
TAGTTCCAAAGTTTTTTTTTTCCAAACTTCCTACTTTCCATCACATCAAACCTTTCATACACACAACTTTTCAGTCACAT
CGTCTCCTATTTCAATCAAATTCTAAACTTTGGGCCGAACTAAACACAACCTTAGTTCCAAACTTTTTATTCAAACTTCC
AACTTTTTTTATCACATCAAAACTTTTATACACACATAAACTTCCAACTTTTCCGTCACATCGTTCTAATTTCAACCAAA
CTTTCAATTCTGNTGTGAACTAAACGTACCCTTTATGTGTGTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54747.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis