Browse Element(s) Details


OsAffx.6347.1.S1_at

Description tigr:9637.m01775
TID=OsAffx.6347.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2074011/11Calcium binding EGF domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20710OsAffx.29946.1.S1_at10/119+12474469..12476640RNA recognition motif family protein
LOC_Os09g20720NANA9+12483351..12483830Strictosidine synthase 1 precursor, putative
LOC_Os09g20730OsAffx.27726.2.S1_at11/119+12484713..12486169hypothetical protein
LOC_Os09g20730Os.55138.1.S1_x_at1/119+12484713..12486169hypothetical protein
LOC_Os09g20740OsAffx.6347.1.S1_at11/119+12493568..12497571Calcium binding EGF domain containing protein
LOC_Os09g20740Os.54747.1.S1_at1/119+12493568..12497571Calcium binding EGF domain containing protein
LOC_Os09g20750OsAffx.6348.1.S1_at11/119+12501624..12502148hypothetical protein
LOC_Os09g20760NANA9+12506674..12508442retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g20770OsAffx.18314.1.S1_at1/119+12511574..12516407hypothetical protein
LOC_Os09g20780OsAffx.29946.1.S1_at5/119+12519956..12520243RNA recognition motif family protein
LOC_Os09g20790OsAffx.6349.1.S1_at11/119+12520761..12520997hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0005886cellular_componentplasma membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6347.1.S1_at--727--8591Chr09:12494247..12494271 (25 bp)
TGGTAATCACATCTCTCTAATCACT
LOC_Os09g20740
OsAffx.6347.1.S1_at--359--9491Chr09:12494234..12494258 (25 bp)
TCTCTAATCACTCGCCTTCGGATTG
LOC_Os09g20740
OsAffx.6347.1.S1_at--1045--2511Chr09:12494111..12494135 (25 bp)
AACTTCTCAGCGAAAGTCTCAGACT
LOC_Os09g20740
OsAffx.6347.1.S1_at--915--1151Chr09:12494097..12494121 (25 bp)
AGTCTCAGACTTCGGTGCTTCTATC
LOC_Os09g20740
OsAffx.6347.1.S1_at--77--7332Chr09:12494083..12494107 (25 bp)
GTGCTTCTATCTTGGCTCCAACGGA
LOC_Os09g20740
OsAffx.6347.1.S1_at--302--8331Chr09:12494070..12494094 (25 bp)
GGCTCCAACGGATGAGATGCAGTTT
LOC_Os09g20740
OsAffx.6347.1.S1_at--458--6331Chr09:12494055..12494079 (25 bp)
GATGCAGTTTGTTACGCTAGTCCAA
LOC_Os09g20740
OsAffx.6347.1.S1_at--331--5651Chr09:12493759..12493783 (25 bp)
GACATGTCTTCCATAAATAGGCCAT
LOC_Os09g20740
OsAffx.6347.1.S1_at--597--5311Chr09:12493697..12493721 (25 bp)
GAAGGTCATGGAACACCAATGCGCA
LOC_Os09g20740
OsAffx.6347.1.S1_at--650--4591Chr09:12493677..12493701 (25 bp)
GCGCAAGACAGAACCCAGAAGAGAT
LOC_Os09g20740
OsAffx.6347.1.S1_at--678--7671Chr09:12493638..12493662 (25 bp)
GGGATTCATCTTATGTGATCAACTC
LOC_Os09g20740
Target Sequence 
TGGTAATCACATCTCTCTAATCACTCGCCTTCGGATTGCCCATGAGTCTGCTGAGGCGCTTGCCTACCTCCACTCTTGTG
CTTCACCACCAATCCTACATGGTGATGTCAAGTCATCCAACATCCTCCTTGACAACAACTTCTCAGCGAAAGTCTCAGAC
TTCGGTGCTTCTATCTTGGCTCCAACGGATGAGATGCAGTTTGTTACGCTAGTCCAAGGAACTTGTGGGTATCTTGACCC
AGAGTACATGCAAACATGCCAATTAACAGATAAGAGTGATGAGAACAAGCTCGAGGATATGTTGAATGATCAAATTAAGA
ATAACGAGAATATGGAGTTTCTGGAAGAAATGGCAGAGTTAGCAAGAAAATGCTTAGACATGTCTTCCATAAATAGGCCA
TCAATGAAGGAAATTGGAGACGAACTTGGTAGGCTAAGGAAGGTCATGGAACACCAATGCGCAAGACAGAACCCAGAAGA
GATGGAGAGCTTTCTTGGGGATTCATCTTATGTGATCAACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6347.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis