Browse Element(s) Details


Os.54778.1.S1_at

Description gb:AK106741.1
DB_XREF= gi:32991950
TID=Os.54778.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54778 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-115-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-B04, full insert sequence.
FL= gb:AK106741.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1238010/11No apical meristem protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12350OsAffx.6249.1.S1_at11/119+7044390..7053384hypothetical protein
LOC_Os09g12350Os.12366.1.S1_a_at1/119+7044390..7053384hypothetical protein
LOC_Os09g12360NANA9+7064368..7065024hypothetical protein
LOC_Os09g12370NANA9+7068308..7070423transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g12380Os.54778.1.S1_at10/119+7076214..7077851No apical meristem protein, expressed
LOC_Os09g12390NANA9+7086048..7086810hypothetical protein
LOC_Os09g12400OsAffx.6250.1.S1_at11/119+7093058..7093822hypothetical protein
LOC_Os09g12410OsAffx.29816.2.S1_at11/119+7094651..7096308hAT dimerisation domain-containing protein, putative
LOC_Os09g12410OsAffx.29816.1.S1_at1/119+7094651..7096308hAT dimerisation domain-containing protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54778.1.S1_at--728--3251Chr09:7076764..7076788 (25 bp)
CAACCGTGGCGCACGACGACGAAGG
LOC_Os09g12380
Os.54778.1.S1_at--742--7831Chr09:7076617..7076641 (25 bp)
GGTACCGTCGAACGCTGATGCTCTT
LOC_Os09g12380
Os.54778.1.S1_at--917--8251Chr09:7076461..7076485 (25 bp)
GGCAGCCACCGTGTTGTACATTTGT
LOC_Os09g12380
Os.54778.1.S1_at--1138--7011Chr09:7076446..7076470 (25 bp)
GTACATTTGTGGTGCACCCGTGCGC
LOC_Os09g12380
Os.54778.1.S1_at--435--4111Chr09:7076413..7076437 (25 bp)
CGAAGATGCGACACGGCGCGGCCTA
LOC_Os09g12380
Os.54778.1.S1_at--1106--3951Chr09:7076357..7076381 (25 bp)
CGGAGAGGCGGTTACCATCTGCCGA
LOC_Os09g12380
Os.54778.1.S1_at--1066--9171Chr09:7076338..7076362 (25 bp)
TGCCGAGGCGTGCAGTACATACTAC
LOC_Os09g12380
Os.54778.1.S1_at--955--7011Chr09:7076324..7076348 (25 bp)
GTACATACTACGACTACTGGACAGT
LOC_Os09g12380
Os.54778.1.S1_at--199--10051Chr09:7076300..7076324 (25 bp)
TAGTTTATATACGACTTGTTGCTCC
LOC_Os09g12380
Os.54778.1.S1_at--506--9311Chr09:7076274..7076298 (25 bp)
TCCCGTCCTCACAAGAATGCGATTG
LOC_Os09g12380
Os.54778.1.S1_at--907--9811Chr09:7076214..7076238 (25 bp)
TAACAAGAGTGTTGTACTTCCCATC
NONE
Target Sequence 
CAACCGTGGCGCACGACGACGAAGGCCGCCACGCACGGGGCGCACCGCGGCCACAAGACGGCGGCACCAGCACGACGACG
ACGATGGTGGCCAGCGCCGGCGCCGAGCGCGGCAGCACGACGGGCCACCTGCCGGCCGCCACCGCCGGGTACCGTCGAAC
GCTGATGCTCTTCCTGGAGGAGGAGGACGACGACGCCGTGGAGGATGAGCAGCAGCAGCAGCAGGCGCCGCCGCTGCCAC
CCGCGACGTCGACGGCGACGACGACGACGAGGACGGCGGCGGAAGCCAATGTGCAGCGGCAGCGGCAGCCACCGTGTTGT
ACATTTGTGGTGCACCCGTGCGCGGTGCACGCGAAGATGCGACACGGCGCGGCCTACGGGTGCGGCTGCCGTGTGACCGG
CGCTGTCCGGAGAGGCGGTTACCATCTGCCGAGGCGTGCAGTACATACTACGACTACTGGACAGTAGTTTATATACGACT
TGTTGCTCCCTCCCGTCCTCACAAGAATGCGATTGTAGCATTCAAATTTTGTACTGTACAATAGAGAATATAACAAGAGT
GTTGTACTTCCCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54778.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis