Browse Element(s) Details


Os.54788.1.S1_at

Description gb:AK106771.1
DB_XREF= gi:32991980
TID=Os.54788.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54788 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-115-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-F09, full insert sequence.
FL= gb:AK106771.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4145011/11F-box domain containing protein, expressed
LOC_Os12g414602/11hypothetical protein
LOC_Os02g286801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41410OsAffx.20072.1.S1_at11/1112+25622771..25624261hypothetical protein
LOC_Os12g41420OsAffx.20073.1.S1_at11/1112+25629337..25629726lectin protein kinase, putative
LOC_Os12g41420OsAffx.20077.1.S1_x_at1/1112+25629337..25629726lectin protein kinase, putative
LOC_Os12g41430OsAffx.32134.3.S1_at11/1112+25631101..25632756expressed protein
LOC_Os12g41430OsAffx.32134.1.S1_s_at11/1112+25631101..25632756expressed protein
LOC_Os12g41430Os.18757.2.S1_x_at3/1112+25631101..25632756expressed protein
LOC_Os12g41440Os.55580.1.S1_at1/1112+25635595..25639713retrotransposon protein, putative, LINE subclass
LOC_Os12g41450Os.54788.1.S1_at11/1112+25644266..25646033F-box domain containing protein, expressed
LOC_Os12g41460OsAffx.32135.1.S1_at11/1112+25654058..25657610hypothetical protein
LOC_Os12g41460Os.54788.1.S1_at2/1112+25654058..25657610hypothetical protein
LOC_Os12g41470OsAffx.20076.1.S1_at11/1112+25658742..25659274hypothetical protein
LOC_Os12g41480NANA12+25661287..25661855hypothetical protein
LOC_Os12g41490Os.9468.2.A1_at11/1112+25666158..25668949Protein kinase domain containing protein, expressed
LOC_Os12g41490Os.9468.2.A2_at11/1112+25666158..25668949Protein kinase domain containing protein, expressed
LOC_Os12g41490OsAffx.20077.1.S1_x_at1/1112+25666158..25668949Protein kinase domain containing protein, expressed
LOC_Os12g41500Os.9468.1.S1_at11/1112+25668463..25672910thiosulfate sulfurtransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54788.1.S1_at--626--451Chr12:25645601..25645625 (25 bp)
ATCTACTACACGGACAACGATGAGG
LOC_Os12g41450
Os.54788.1.S1_at--120--1892Chr12:25645617..25645641 (25 bp)
ACGATGAGGACTACGCGCTGCTCTA
LOC_Os12g41450
Os.54788.1.S1_at--1077--8431Chr12:25645704..25645728 (25 bp)
GGCCATCTCTACCATGGCTGACTTG
LOC_Os12g41450
Os.54788.1.S1_at--614--8312Chr12:25645719..25645743 (25 bp)
GGCTGACTTGGCCATTGCCGATCTG
LOC_Os12g41450
Os.54788.1.S1_at--477--6391Chr12:25645738..25645762 (25 bp)
GATCTGGCTTGTTCCCAATTTCGGT
LOC_Os12g41450
Os.54788.1.S1_at--289--3171Chr12:25645753..25645777 (25 bp)
CAATTTCGGTTACTACTGTCAAGGT
LOC_Os12g41450
Os.54788.1.S1_at--48--2271Chr12:25645858..25645882 (25 bp)
AAATCTACGTTTTATTGTCTCTGAT
LOC_Os12g41450
Os.54788.1.S1_at--1017--10491Chr12:25645899..25645923 (25 bp)
TTCAATCCAAATGTCGGGCTGTGCA
LOC_Os12g41450
Os.54788.1.S1_at--289--3991Chr12:25645913..25645937 (25 bp)
CGGGCTGTGCATAGAGTGTGACTTT
LOC_Os12g41450
Os.54788.1.S1_at--600--7311Chr12:25645964..25645988 (25 bp)
GTGCTGATAAGACTAGACTTCTTTT
LOC_Os12g41450
Os.54788.1.S1_at--999--10573Chr12:25645990..25646014 (25 bp)
TTCTCTACCTGTATGGATTTGACCA
LOC_Os12g41450
Target Sequence 
ATCTACTACACGGACAACGATGAGGACTACGCGCTGCTCTACCCGGAGGCGCCCAGGGACATCGGCGTCTACAGCGTCGC
CGACGGCAGCTTCTCGCCGTTCCGGCCATCTCTACCATGGCTGACTTGGCCATTGCCGATCTGGCTTGTTCCCAATTTCG
GTTACTACTGTCAAGGTTAAGTTAGGAAGAACTAAATTAACACAGAGCAGCTAAGTTTGATTCATTGATTGGTTGTTTTT
TGTTGCTTTCATTATTTAAATCTACGTTTTATTGTCTCTGATTTTTTTTTAATCATCGTTCAATCCAAATGTCGGGCTGT
GCATAGAGTGTGACTTTTCTTTTTTCCTTCTAAATTAAATTTTGTGCTGATAAGACTAGACTTCTTTTTTTCTCTACCTG
TATGGATTTGACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54788.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis