Browse Element(s) Details


Os.54836.1.S1_at

Description gb:AK106871.1
DB_XREF= gi:32992080
TID=Os.54836.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54836 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-118-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-D08, full insert sequence.
FL= gb:AK106871.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0865011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08600OsAffx.28349.1.S1_at11/117+4430893..4432730B3 DNA binding domain containing protein
LOC_Os07g08610Os.51418.1.S1_at5/117+4433036..4435337retrotransposon protein, putative, unclassified
LOC_Os07g08620NANA7+4441434..4442458retrotransposon protein, putative, unclassified
LOC_Os07g08630NANA7+4444177..4447943retrotransposon protein, putative, unclassified
LOC_Os07g08640Os.56343.1.S1_at3/117+4451901..4452899retrotransposon protein, putative, unclassified
LOC_Os07g08650Os.54836.1.S1_at11/117+4455911..4457525expressed protein
LOC_Os07g08660Os.4726.1.S1_at11/117+4458855..446093040S ribosomal protein S15, putative, expressed
LOC_Os07g08670NANA7+4465720..4466277expressed protein
LOC_Os07g08680OsAffx.16160.1.S1_at11/117+4469620..4471386expressed protein
LOC_Os07g08690OsAffx.28350.1.S1_at11/117+4472479..4472793hypothetical protein
LOC_Os07g08700Os.53211.1.S1_at1/117+4475947..4476318hypothetical protein
LOC_Os07g08710Os.6038.1.S1_at11/117+4481747..4483068linker histone H1 and H5 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54836.1.S1_at--1109--1451Chr07:4456961..4456985 (25 bp)
AGAAGTTCGCGGACAGGCCTTACAG
LOC_Os07g08650
Os.54836.1.S1_at--466--8431Chr07:4456976..4457000 (25 bp)
GGCCTTACAGATCGAAGTGGTCCAT
LOC_Os07g08650
Os.54836.1.S1_at--267--5011Chr07:4457035..4457059 (25 bp)
GCAGGCTCTCTGGTGTTCATCGGGA
LOC_Os07g08650
Os.54836.1.S1_at--551--9611Chr07:4457051..4457075 (25 bp)
TCATCGGGACTGAGCGCTGCCTGAA
LOC_Os07g08650
Os.54836.1.S1_at--329--8091Chr07:4457082..4457106 (25 bp)
GGACGACGAAAGGTACCTCTCCGTG
LOC_Os07g08650
Os.54836.1.S1_at--344--2591Chr07:4457275..4457299 (25 bp)
AACGTCACCGTGAGATGCTACGACA
LOC_Os07g08650
Os.54836.1.S1_at--38--6351Chr07:4457288..4457312 (25 bp)
GATGCTACGACATGCGCAGCCGGAA
LOC_Os07g08650
Os.54836.1.S1_at--980--5391Chr07:4457310..4457334 (25 bp)
GAAGCTCTACTTCGTGGAAGACGCT
LOC_Os07g08650
Os.54836.1.S1_at--101--7011Chr07:4457388..4457412 (25 bp)
GTACTGTACAGAGACATTCATCCAA
LOC_Os07g08650
Os.54836.1.S1_at--508--111Chr07:4457403..4457427 (25 bp)
ATTCATCCAATGATCCAAGCAGGTA
LOC_Os07g08650
Os.54836.1.S1_at--493--4951Chr07:4457455..4457479 (25 bp)
GCATTTGTTGCTAGGTGATTTCTTC
LOC_Os07g08650
Target Sequence 
AGAAGTTCGCGGACAGGCCTTACAGATCGAAGTGGTCCATGTGGAGATCGCGGTGGTGGCTCGCCGACGACGGCGCAGGC
TCTCTGGTGTTCATCGGGACTGAGCGCTGCCTGAATCCCTCGGACGACGAAAGGTACCTCTCCGTGTTCCGGTGGGACGC
CGAGCTGCGGTTCTGGCGCCGGCCCAAGAGCTTCGGCGGCCGCGCGCTGTTCCTCAGCGCCGGCACGGCGTTCTTCGCCG
ACGCGAGGATCCTGCCGTGGTGCGCCGGCGACTGCATCTACTTCACCGACGACGAGAGCGTGGTCACCGGGGAGAACGTC
ACCGTGAGATGCTACGACATGCGCAGCCGGAAGCTCTACTTCGTGGAAGACGCTGGGGCCAAGGTGGCGCTGGCCCCACC
TGTCTGGGTCATGCCGTTCCATGAATAGTACTGTACAGAGACATTCATCCAATGATCCAAGCAGGTAAATCATTGATGTG
TAGGACTTTGATTAGCATTTGTTGCTAGGTGATTTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54836.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis