Browse Element(s) Details


Os.54864.2.S1_at

Description gb:AK111302.1
DB_XREF= gi:32996511
TID=Os.54864.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54864 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-181-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-181-B05, full insert sequence.
FL= gb:AK111302.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0998011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09940OsAffx.27540.1.S1_at11/116+5067260..5067577hypothetical protein
LOC_Os06g09950OsAffx.15341.1.S1_at11/116+5070901..5071113hypothetical protein
LOC_Os06g09960OsAffx.27541.1.S1_at10/116+5081730..5083092expressed protein
LOC_Os06g09960OsAffx.24432.1.S1_at3/116+5081730..5083092expressed protein
LOC_Os06g09970OsAffx.4783.1.S1_at11/116+5084604..5085091hypothetical protein
LOC_Os06g09980Os.54864.2.S1_at11/116+5089958..5091121expressed protein
LOC_Os06g09990OsAffx.27542.1.S1_s_at11/116+5096036..5096381hypothetical protein
LOC_Os06g09990Os.39031.1.S1_at5/116+5096036..5096381hypothetical protein
LOC_Os06g10000Os.55490.1.S1_at10/116+5101390..5102442expressed protein
LOC_Os06g10000Os.57449.1.S1_x_at1/116+5101390..5102442expressed protein
LOC_Os06g10010NANA6+5103666..5104193hypothetical protein
LOC_Os06g10020Os.56042.1.S1_at11/116+5105166..5105930expressed protein
LOC_Os06g10030NANA6+5108369..5108719hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54864.2.S1_at--370--2171Chr06:5090532..5090556 (25 bp)
ACACGCTCTGCGGTTCGGTGAAAAT
LOC_Os06g09980
Os.54864.2.S1_at--573--8331Chr06:5090568..5090592 (25 bp)
GGCTGCACCATTTGCAACTATGCAA
LOC_Os06g09980
Os.54864.2.S1_at--735--3071Chr06:5090599..5090623 (25 bp)
AATAATTCTCGCTCAACCTATGTTG
LOC_Os06g09980
Os.54864.2.S1_at--392--9851Chr06:5090649..5090673 (25 bp)
TACAAGAACGGGTCGGCTGGCTGCC
LOC_Os06g09980
Os.54864.2.S1_at--974--4311Chr06:5090687..5090711 (25 bp)
CCATCCATCCCAGTGTAACTTAGTA
LOC_Os06g09980
Os.54864.2.S1_at--864--6991Chr06:5090709..5090733 (25 bp)
GTACGGCTGTAACATATTCTACCAC
LOC_Os06g09980
Os.54864.2.S1_at--1078--10051Chr06:5090830..5090854 (25 bp)
TAGTGCTGCAGAGTCTACTGGCAAG
LOC_Os06g09980
Os.54864.2.S1_at--82--6711Chr06:5090867..5090891 (25 bp)
GTTCCTGAGTCAGTTCAAGTGTACT
LOC_Os06g09980
Os.54864.2.S1_at--914--1331Chr06:5090912..5090936 (25 bp)
AGAGTGAGTCCATCGGTGTCCAAGC
LOC_Os06g09980
Os.54864.2.S1_at--340--2791Chr06:5090951..5090975 (25 bp)
AAGAGTTTATCCTGGCATCCTGCTG
LOC_Os06g09980
Os.54864.2.S1_at--957--3831Chr06:5090970..5090994 (25 bp)
CTGCTGCCTGCTGTGTACTAAGGAT
LOC_Os06g09980
Target Sequence 
ACACGCTCTGCGGTTCGGTGAAAATTCTTATCTTATGGCTGCACCATTTGCAACTATGCAAGAACACAATAATTCTCGCT
CAACCTATGTTGAGTCTGGGTGAATTAGCACTGCATCTACAAGAACGGGTCGGCTGGCTGCCGTTGCTTGCTATTCCATC
CATCCCAGTGTAACTTAGTACGGCTGTAACATATTCTACCACTACGAATCTAGATAGGTAGCTATCTAGATTCGTAGTTC
TAAAATATATCATATTCGTGCTAGGTTGCACTTATATTGGTATGGAGAGAGTTGCGTGTAGTGCTGCAGAGTCTACTGGC
AAGCCATAGAACAAGGTTCCTGAGTCAGTTCAAGTGTACTACTACTGTACTTTCATTGCTAGAGTGAGTCCATCGGTGTC
CAAGCTCAGACATGCAGACAAGAGTTTATCCTGGCATCCTGCTGCCTGCTGTGTACTAAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54864.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis