Browse Element(s) Details


Os.55033.1.A1_at

Description gb:AK107345.1
DB_XREF= gi:32992554
TID=Os.55033.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55033 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-126-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-126-G08, full insert sequence.
FL= gb:AK107345.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3747010/11MATE efflux family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37430OsAffx.28025.2.S1_at10/113+20709434..20714568hypothetical protein
LOC_Os03g37440NANA3+20715418..20716337hypothetical protein
LOC_Os03g37444OsAffx.17914.1.S1_x_at1/113+20717745..20718205NA
LOC_Os03g37450Os.39427.1.A1_at11/113+20719487..20721893hypothetical protein
LOC_Os03g37450OsAffx.28025.4.S1_x_at7/113+20719487..20721893hypothetical protein
LOC_Os03g37450OsAffx.28025.4.S1_at4/113+20719487..20721893hypothetical protein
LOC_Os03g37450Os.39427.1.A1_s_at1/113+20719487..20721893hypothetical protein
LOC_Os03g37450Os.46592.1.S1_at1/113+20719487..20721893hypothetical protein
LOC_Os03g37460NANA3+20725170..20725484hypothetical protein
LOC_Os03g37470OsAffx.25398.1.S1_x_at11/113+20727305..20737288MATE efflux family protein, expressed
LOC_Os03g37470Os.55033.1.A1_at10/113+20727305..20737288MATE efflux family protein, expressed
LOC_Os03g37490Os.6998.1.S1_at11/113+20747776..20754379MATE efflux family protein, expressed
LOC_Os03g37500NANA3+20759571..20766975retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55033.1.A1_at--843--5151Chr03:20728001..20728025 (25 bp)
GCAAGCTTTCGTGGCATATGTTAAT
LOC_Os03g37470
Os.55033.1.A1_at--518--6771Chr03:20727969..20727993 (25 bp)
GTTACTACATCATCGGTGTTCCGTT
LOC_Os03g37470
Os.55033.1.A1_at--412--4031Chr03:20727948..20727972 (25 bp)
CGTTTGGTTGCGTTCTTGGATTTCA
LOC_Os03g37470
Os.55033.1.A1_at--466--2971Chr03:20727795..20727819 (25 bp)
AATGATCGTCGGATTGTTTGTTCAA
LOC_Os03g37470
Os.55033.1.A1_at--1009--6851Chr03:20727780..20727804 (25 bp)
GTTTGTTCAAACTCTCATTCTTGTT
LOC_Os03g37470
Os.55033.1.A1_at--392--7711Chr03:20727557..20727581 (25 bp)
GGGTGACATAGCGAAGCCACTTCTC
LOC_Os03g37470
Os.55033.1.A1_at--766--1691Chr03:20727543..20727567 (25 bp)
AGCCACTTCTCGCTAACGAAGATTG
LOC_Os03g37470
Os.55033.1.A1_at--898--1611Chr03:20727462..20727486 (25 bp)
AGCTGGATGTACGTTTCTAGTTTGA
LOC_Os03g37470
Os.55033.1.A1_at--846--1891Chr03:20727398..20727422 (25 bp)
ACGTACCAGCCGAAATTTGATGTTT
LOC_Os03g37470
Os.55033.1.A1_at--830--6831Chr03:20727377..20727401 (25 bp)
GTTTCTTCTGAATGTACTCTTTTGA
LOC_Os03g37470
Os.55033.1.A1_at--545--10491Chr03:20727305..20727329 (25 bp)
TTAATCTAGACATCTTGTTCCCTGT
NONE
Target Sequence 
GCAAGCTTTCGTGGCATATGTTAATATCGGATGTTACTACATCATCGGTGTTCCGTTTGGTTGCGTTCTTGGATTTCACT
TTGATTTGGGTGCTATGGGGATATATGGTGGAATGATCGTCGGATTGTTTGTTCAAACTCTCATTCTTGTTTATGTCACA
TTTCGTACAGATTGGAATAGAGAGGTAGGAGAAGCAAAGAAGAGGCTCAACAAATGGGGTGACATAGCGAAGCCACTTCT
CGCTAACGAAGATTGAACAAAATGGCATATTTAGAGTGCCAAGTTGATTTGATATGATGCTATATATGGGAAGCTGGATG
TACGTTTCTAGTTTGAGACATTATGCCGTATATGTGTATAGGGCCAAATTNATCTACGTACCAGCCGAAATTTGATGTTT
CTTCTGAATGTACTCTTTTGATTTGTTATTAATCTTTCGTANTGGCTAATGTAACCAAAATGCCCAAATTAATCTAGACA
TCTTGTTCCCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55033.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis