Browse Element(s) Details


Os.55104.1.S1_at

Description gb:AK107497.1
DB_XREF= gi:32992706
TID=Os.55104.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55104 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-D09, full insert sequence.
FL= gb:AK107497.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2595010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g25920NANA6+15174784..15175495retrotransposon, putative, centromere-specific
LOC_Os06g25930NANA6+15176968..15179111retrotransposon, putative, centromere-specific
LOC_Os06g25940OsAffx.27824.1.S1_at10/116+15180834..15181875hypothetical protein
LOC_Os06g25950OsAffx.15616.1.S1_at11/116+15188243..15196493expressed protein
LOC_Os06g25950Os.55104.1.S1_at10/116+15188243..15196493expressed protein
LOC_Os06g25960Os.46610.1.A1_x_at1/116+15197859..15199277hypothetical protein
LOC_Os06g25970NANA6+15206796..15207686retrotransposon protein, putative, unclassified
LOC_Os06g25980OsAffx.4941.1.S1_at11/116+15213558..15214163hypothetical protein
LOC_Os06g25990OsAffx.20408.1.S1_at1/116+15217546..15222170retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25990OsAffx.13774.1.S1_at1/116+15217546..15222170retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25990OsAffx.9772.1.S1_at1/116+15217546..15222170retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55104.1.S1_at--669--1931NONE
ACGGACTGTGCAGATGGTCCTGCCT
NONE
Os.55104.1.S1_at--664--1311Chr06:15196015..15196039 (25 bp)
AGATGGTCCTGCCTCAAGGTATCAT
LOC_Os06g25950
Os.55104.1.S1_at--302--2911Chr06:15196030..15196054 (25 bp)
AAGGTATCATTCATCAGCTGGAGTT
LOC_Os06g25950
Os.55104.1.S1_at--590--1611Chr06:15196045..15196184 (25 bp)
AGCTGGAGTTGTTGCCGCAAGCGCT
LOC_Os06g25950
Os.55104.1.S1_at--710--2671Chr06:15196178..15196202 (25 bp)
AAGCGCTGTGTTCTCAATCTCAGCA
LOC_Os06g25950
Os.55104.1.S1_at--732--9731Chr06:15196191..15196215 (25 bp)
TCAATCTCAGCAGCCGTTGGTATCA
LOC_Os06g25950
Os.55104.1.S1_at--134--7851Chr06:15196209..15196233 (25 bp)
GGTATCACTGGACTTGTGTGGTACA
LOC_Os06g25950
Os.55104.1.S1_at--664--7471Chr06:15196224..15196248 (25 bp)
GTGTGGTACATTCGCAAGATCAAAT
LOC_Os06g25950
Os.55104.1.S1_at--781--8551Chr06:15196395..15196419 (25 bp)
TGGATGGCAACACCCTTGTTTCTTT
LOC_Os06g25950
Os.55104.1.S1_at--593--2171Chr06:15196404..15196428 (25 bp)
ACACCCTTGTTTCTTTTCGTCATAT
LOC_Os06g25950
Os.55104.1.S1_at--924--7131Chr06:15196422..15196446 (25 bp)
GTCATATTCGAGAACTTCATTTGAG
LOC_Os06g25950
Target Sequence 
ACGGACTGTGCAGATGGTCCTGCCTCAAGGTATCATTCATCAGCTGGAGTTGTTGCCGCAAGCGCTGTGTTCTCAATCTC
AGCAGCCGTTGGTATCACTGGACTTGTGTGGTACATTCGCAAGATCAAATCGACCAAAGTGGTGACTTGTGGGGTTCAAA
GCAATGAGAATAGATTTTTTTAATTTGAGATGACTACAAGGAGGATTCAAAGCAATGAGAATATATATTTTTAATTTGAG
ATGACTACAAGGAATATTTTGATGAGGGTAGAGGCCTGGATGGCAACACCCTTGTTTCTTTTCGTCATATTCGAGAACTT
CATTTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55104.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis