Browse Element(s) Details


Os.55106.1.S1_at

Description gb:AK107500.1
DB_XREF= gi:32992709
TID=Os.55106.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55106 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-D12, full insert sequence.
FL= gb:AK107500.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1490011/111,3-beta-glucan synthase component family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14880OsAffx.24261.1.S1_at11/112+8289301..8289687hypothetical protein
LOC_Os02g14890Os.52914.1.S1_at11/112+8292476..8293240expressed protein
LOC_Os02g14900OsAffx.24262.1.S1_at11/112+8299856..83171881,3-beta-glucan synthase component family protein, expressed
LOC_Os02g14900OsAffx.24262.1.S1_s_at11/112+8299856..83171881,3-beta-glucan synthase component family protein, expressed
LOC_Os02g14900Os.55106.1.S1_at11/112+8299856..83171881,3-beta-glucan synthase component family protein, expressed
LOC_Os02g14910OsAffx.2611.1.S1_at11/112+8323890..8325786bZIP transcription factor family protein, expressed
LOC_Os02g14929Os.54112.1.S1_at11/112+8326129..8343174T-complex protein 1, gamma subunit, putative, expressed
LOC_Os02g14929OsAffx.27518.3.S1_x_at4/112+8326129..8343174T-complex protein 1, gamma subunit, putative, expressed
LOC_Os02g14929OsAffx.22180.1.S1_at1/112+8326129..8343174T-complex protein 1, gamma subunit, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006075biological_processbeta-1,3 glucan biosynthesis
GO:0009556biological_processmicrosporogenesis
GO:0009860biological_processpollen tube growth
GO:0010208biological_processpollen wall formation
GO:0000148cellular_component1,3-beta-glucan synthase complex
GO:0003843molecular_function1,3-beta-glucan synthase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55106.1.S1_at--223--7291Chr02:8305825..8305956 (25 bp)
GTGCTTGGGCTTCAGGTTCTTATAA
LOC_Os02g14900
Os.55106.1.S1_at--151--6551Chr02:8305972..8305996 (25 bp)
GATTAGAAAGTCCTCTCCAGTTACT
LOC_Os02g14900
Os.55106.1.S1_at--780--9251Chr02:8305982..8306006 (25 bp)
TCCTCTCCAGTTACTTGATCCAATA
LOC_Os02g14900
Os.55106.1.S1_at--248--7991Chr02:8306015..8306039 (25 bp)
GGATGTTCTGAGTATTTTCATAACC
LOC_Os02g14900
Os.55106.1.S1_at--495--2651Chr02:8306036..8306060 (25 bp)
AACCAATTCAGTACTTCGAGTTATT
LOC_Os02g14900
Os.55106.1.S1_at--1055--6791Chr02:8306206..8306230 (25 bp)
GTTATTCTTGATATTACTTTCTCAT
LOC_Os02g14900
Os.55106.1.S1_at--969--7031Chr02:8306278..8306302 (25 bp)
GTAAAACTTTCTATTGCTGTGGCAT
LOC_Os02g14900
Os.55106.1.S1_at--1038--8431Chr02:8306304..8306328 (25 bp)
GGCCATCATTCTTCCCATATTTTAT
LOC_Os02g14900
Os.55106.1.S1_at--253--4171Chr02:8306317..8306341 (25 bp)
CCCATATTTTATGCTAGTTCCCAAA
LOC_Os02g14900
Os.55106.1.S1_at--419--2391Chr02:8306340..8306364 (25 bp)
AAACTACTTGTCTTGTTCAGCTAGA
LOC_Os02g14900
Os.55106.1.S1_at--913--4351Chr02:8306359..8306383 (25 bp)
GCTAGACGACCTAAAACTTTTCTGG
LOC_Os02g14900
Target Sequence 
GTGCTTGGGCTTCAGGTTCTTATAATAATGGCATGGCATGGATTAGAAAGTCCTCTCCAGTTACTTGATCCAATAATTTT
TCAGGATGTTCTGAGTATTTTCATAACCAATTCAGTACTTCGAGTTATTCAAGTTATTCTTGATATTACTTTCTCATGGA
GAACCAAGAGAACGATGAGATTTAGTCAGAAGCTAAGATTTGCTGTAAAACTTTCTATTGCTGTGGCATGGGCCATCATT
CTTCCCATATTTTATGCTAGTTCCCAAAACTACTTGTCTTGTTCAGCTAGACGACCTAAAACTTTTCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55106.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis