Browse Element(s) Details


Os.55174.1.S1_at

Description gb:AK107626.1
DB_XREF= gi:32992835
TID=Os.55174.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55174 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-131-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-131-D10, full insert sequence.
FL= gb:AK107626.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3773011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37690Os.53766.1.S1_at11/118+23737020..23738267expressed protein
LOC_Os08g37700Os.27730.1.S1_at11/118+23738352..23743390RNA recognition motif family protein, expressed
LOC_Os08g37700Os.27730.1.S2_at11/118+23738352..23743390RNA recognition motif family protein, expressed
LOC_Os08g37700OsAffx.30842.1.S1_at1/118+23738352..23743390RNA recognition motif family protein, expressed
LOC_Os08g37710OsAffx.17382.1.S1_at11/118+23747753..23750195expressed protein
LOC_Os08g37720Os.33678.1.S1_x_at11/118+23750989..23753644expressed protein
LOC_Os08g37720Os.53903.1.S1_at11/118+23750989..23753644expressed protein
LOC_Os08g37730Os.55174.1.S1_at11/118+23761711..23763788Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g37730Os.16502.1.S1_at1/118+23761711..23763788Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g37740NANA8+23769952..23773292retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g37750OsAffx.17383.1.S1_at11/118+23780739..23784305Cellulase containing protein, expressed
LOC_Os08g37750Os.19280.1.A1_at11/118+23780739..23784305Cellulase containing protein, expressed
LOC_Os08g37760Os.17554.1.S1_at11/118+23788248..23789810Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g37760OsAffx.17384.1.S1_at11/118+23788248..23789810Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g37760OsAffx.17384.1.S1_s_at11/118+23788248..23789810Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55174.1.S1_at--1054--9331Chr08:23762486..23762507 (22 bp)
TCTACTCCCTTAGCCTTAAGGTGGA
LOC_Os08g37730
Os.55174.1.S1_at--624--2751Chr08:23762047..23762071 (25 bp)
AAGACTGCCAGCTCACGTCGGTGGA
LOC_Os08g37730
Os.55174.1.S1_at--140--3951Chr08:23762008..23762032 (25 bp)
CGGTACACGGGATCGTCGAGACGAT
LOC_Os08g37730
Os.55174.1.S1_at--581--131Chr08:23761889..23761913 (25 bp)
ATTAATATGCGCCAACCGTGTGTAA
LOC_Os08g37730
Os.55174.1.S1_at--713--4551Chr08:23761881..23761905 (25 bp)
GCGCCAACCGTGTGTAATGTGTGCA
LOC_Os08g37730
Os.55174.1.S1_at--53--2991Chr08:23761866..23761890 (25 bp)
AATGTGTGCACTTTCGATTCTTCTA
LOC_Os08g37730
Os.55174.1.S1_at--640--6571Chr08:23761851..23761875 (25 bp)
GATTCTTCTAGAACTCTGTACGCTG
LOC_Os08g37730
Os.55174.1.S1_at--57--4731Chr08:23761830..23761854 (25 bp)
GCTGGATGCACATGTACCGCAGTTA
LOC_Os08g37730
Os.55174.1.S1_at--84--1211Chr08:23761810..23761834 (25 bp)
AGTTACTACACCCACGTACATTTCT
LOC_Os08g37730
Os.55174.1.S1_at--150--7031Chr08:23761795..23761819 (25 bp)
GTACATTTCTGTAGTTCATCTTCAC
LOC_Os08g37730
Os.55174.1.S1_at--810--3011Chr08:23761763..23761787 (25 bp)
AATGCATCATGGTCTACCACTCTGT
LOC_Os08g37730
Target Sequence 
TCTACTCCCTTAGCCTTAAGGTGGAAGAAGACTGCCAGCTCACGTCGGTGGACGACATCGCGGCGGCGGTACACGGGATC
GTCGAGACGATCGAGCAAGAGCAGCAGCAGCAGCAGAAGCAGAGCTGTAGCTAGATCAGCTAGAGTATTTTCTTAGAACA
TTTAGCAATGGCAAAAATGGTCAATATTAATATGCGCCAACCGTGTGTAATGTGTGCACTTTCGATTCTTCTAGAACTCT
GTACGCTGGATGCACATGTACCGCAGTTACTACACCCACGTACATTTCTGTAGTTCATCTTCACTTCAATTAATGCATCA
TGGTCTACCACTCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55174.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis