Browse Element(s) Details


Os.55266.1.S1_at

Description gb:AK107761.1
DB_XREF= gi:32992970
TID=Os.55266.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55266 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-A09, full insert sequence.
FL= gb:AK107761.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1062011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10590Os.50123.1.S1_x_at11/117+5745694..5748126Sugar transporter family protein, expressed
LOC_Os07g10600Os.2224.1.S1_a_at11/117+5749185..5755006Cycloartenol-C-24-methyltransferase 1, putative, expressed
LOC_Os07g10610NANA7+5765881..5766816expressed protein
LOC_Os07g10620Os.55266.1.S1_at11/117+5767849..5769747expressed protein
LOC_Os07g10620OsAffx.5285.1.S1_at11/117+5767849..5769747expressed protein
LOC_Os07g10620OsAffx.5285.1.S1_x_at11/117+5767849..5769747expressed protein
LOC_Os07g10630Os.47755.1.S1_at11/117+5772256..5775785leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os07g10630Os.27728.1.S1_at1/117+5772256..5775785leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os07g10640OsAffx.28389.1.S1_at11/117+5778285..5779098expressed protein
LOC_Os07g10650OsAffx.5286.1.S1_at11/117+5784632..5784928hypothetical protein
LOC_Os07g10660Os.16825.1.S1_at11/117+5785515..578752340S ribosomal protein S2, putative, expressed
LOC_Os07g10660OsAffx.5287.1.S1_s_at11/117+5785515..578752340S ribosomal protein S2, putative, expressed
LOC_Os07g10670OsAffx.16198.1.S1_at11/117+5793684..5794307hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55266.1.S1_at--357--10011Chr07:5769483..5769507 (25 bp)
TAGCTTAAGCTGTCGTCAGCTCAGC
LOC_Os07g10620
Os.55266.1.S1_at--449--1591Chr07:5769510..5769534 (25 bp)
AGCTCGTCGTAATCTTGCATGCCTT
LOC_Os07g10620
Os.55266.1.S1_at--195--431Chr07:5769521..5769545 (25 bp)
ATCTTGCATGCCTTGTGTTGGCTAA
LOC_Os07g10620
Os.55266.1.S1_at--749--6611Chr07:5769537..5769561 (25 bp)
GTTGGCTAATGTTAATCTGTGGTTT
LOC_Os07g10620
Os.55266.1.S1_at--1035--10271Chr07:5769592..5769616 (25 bp)
TTTGCGGTTTTTTATTGATGTTGTC
LOC_Os07g10620
Os.55266.1.S1_at--1119--771Chr07:5769637..5769661 (25 bp)
ATGTGCAACGTAGCAGGATGTGGCT
LOC_Os07g10620
Os.55266.1.S1_at--77--7992Chr07:5769652..5769676 (25 bp)
GGATGTGGCTACTGGTACGTGATTA
LOC_Os07g10620
Os.55266.1.S1_at--875--1951Chr07:5769662..5769686 (25 bp)
ACTGGTACGTGATTAGCGATCTCGC
LOC_Os07g10620
Os.55266.1.S1_at--1057--9991Chr07:5769675..5769699 (25 bp)
TAGCGATCTCGCGTGACATTTGAAA
LOC_Os07g10620
Os.55266.1.S1_at--961--5551Chr07:5769696..5769720 (25 bp)
GAAAGCTGTTTTCACGTTTCATGAA
LOC_Os07g10620
Os.55266.1.S1_at--340--10871Chr07:5769723..5769747 (25 bp)
TTGGAAGCTGTTTTCATATTTCAGT
LOC_Os07g10620
Target Sequence 
TAGCTTAAGCTGTCGTCAGCTCAGCTCAGCTCGTCGTAATCTTGCATGCCTTGTGTTGGCTAATGTTAATCTGTGGTTTT
TTTTTGTTTTTATTATTTTTTAGGTAAAATTTGCGGTTTTTTATTGATGTTGTCATGAATTAAAATGAGTGCAAATGTGC
AACGTAGCAGGATGTGGCTACTGGTACGTGATTAGCGATCTCGCGTGACATTTGAAAGCTGTTTTCACGTTTCATGAAAT
TTGGAAGCTGTTTTCATATTTCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55266.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis