Browse Element(s) Details


Os.55267.1.S1_at

Description gb:AK107766.1
DB_XREF= gi:32992975
TID=Os.55267.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55267 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-B02, full insert sequence.
FL= gb:AK107766.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4463011/11Plastocyanin-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44590NANA3+25061381..25064807transposon protein, putative, Mutator sub-class
LOC_Os03g44600OsAffx.27271.1.S1_at11/113+25065210..25065793hypothetical protein
LOC_Os03g44610Os.9033.1.S1_at10/113+25070355..25078460IQ calmodulin-binding motif family protein, expressed
LOC_Os03g44620Os.46241.1.S1_s_at11/113+25081435..25085183DnaJ protein homolog, putative, expressed
LOC_Os03g44620Os.46241.2.S1_s_at11/113+25081435..25085183DnaJ protein homolog, putative, expressed
LOC_Os03g44630Os.55267.1.S1_at11/113+25085236..25085992Plastocyanin-like domain containing protein, expressed
LOC_Os03g44636OsAffx.25539.1.S1_at11/113+25089731..25090282Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g44642NANA3+25091335..25091829Zinc finger, C3HC4 type family protein
LOC_Os03g44650OsAffx.13346.1.S1_at11/113+25093821..25094795Glutaredoxin family protein
LOC_Os03g44660Os.16447.1.S1_at11/113+25096714..25100593Pyrimidine 5'-nucleotidase family protein, expressed
LOC_Os03g44670Os.7277.1.S1_s_at11/113+25101804..25105719expressed protein
LOC_Os03g44680OsAffx.25541.1.S1_at11/113+25109139..25109573hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006979biological_processresponse to oxidative stress
GO:0009611biological_processresponse to wounding
GO:0009646biological_processresponse to absence of light
GO:0015690biological_processaluminum ion transport
GO:0031225cellular_componentanchored to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55267.1.S1_at--833--4811Chr03:25085926..25085950 (25 bp)
GCAGTTACCGCCGTCGACGTGAAGT
LOC_Os03g44630
Os.55267.1.S1_at--958--7211Chr03:25085914..25085938 (25 bp)
GTCGACGTGAAGTTGCCAGCCATGG
LOC_Os03g44630
Os.55267.1.S1_at--1058--7631Chr03:25085511..25085535 (25 bp)
GGGAGTTCGACGACTGCACCGCCGA
LOC_Os03g44630
Os.55267.1.S1_at--1138--9871Chr03:25085422..25085446 (25 bp)
TACTTCATATGCACCGTCGGCAACT
LOC_Os03g44630
Os.55267.1.S1_at--273--9731Chr03:25085382..25085406 (25 bp)
TCAAGGTGTACGTCGCCTCCCAGAA
LOC_Os03g44630
Os.55267.1.S1_at--624--4351Chr03:25085363..25085387 (25 bp)
CCAGAATGCGCCCTAGATGAACCAT
LOC_Os03g44630
Os.55267.1.S1_at--1070--1291Chr03:25085349..25085373 (25 bp)
AGATGAACCATTCCGCTTTGCTTCT
LOC_Os03g44630
Os.55267.1.S1_at--721--10591Chr03:25085325..25085349 (25 bp)
TTCTGCAGTTTCTCATTGATCCATA
LOC_Os03g44630
Os.55267.1.S1_at--497--10171Chr03:25085280..25085304 (25 bp)
TATCATCATCATTGGTGTTCGTAAC
LOC_Os03g44630
Os.55267.1.S1_at--240--4011Chr03:25085261..25085285 (25 bp)
CGTAACCATTAACCATTTCGCTATC
LOC_Os03g44630
Os.55267.1.S1_at--899--2631Chr03:25085251..25085275 (25 bp)
AACCATTTCGCTATCCATTCAGTAT
LOC_Os03g44630
Target Sequence 
GCAGTTACCGCCGTCGACGTGAAGTTGCCAGCCATGGAAGGGGCGTGCCTCCGCCTCGTCGTGAACCCGCAGCAACCGAC
GACGCTCCTCGCCGTCTTCCTCCTCCTCCTCGTGGCCGCCGCCGTCGCGCCGCCGCACGTCCTCGCCGCCGACCACGTCG
TGGGGGGCTCCATCTGGTCCATCCCTCCCAGGCCCGGCCTGTACAGAGCCTGGGCCGACAACCGGACGTTCGTCGCCGGC
GACAACCTCGTGTTCAGGTTCGAGACGGGGATGTACAACGTGGTGCAGGTGGGGAGGCGGGAGTTCGACGACTGCACCGC
CGACGACCCCTACCGGGACTGGACCGACGGCCCCGCCGTCGTCACGCTCGGCTCCGCCGCCGTCCGCTACTTCATATGCA
CCGTCGGCAACTACTGCTCCCTCGGCGTCAAGGTGTACGTCGCCTCCCAGAATGCGCCCTAGATGAACCATTCCGCTTTG
CTTCTTCTGCAGTTTCTCATTGATCCATATCACAGTTTCTGATCCATCATATCATCATCATTGGTGTTCGTAACCATTAA
CCATTTCGCTATCCATTCAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55267.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis