Browse Element(s) Details


Os.55275.1.S1_s_at

Description gb:AK107779.1
DB_XREF= gi:32992988
TID=Os.55275.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55275 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-C04, full insert sequence.
FL= gb:AK107779.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2430011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24270NANA3+13794977..13801132transposon protein, putative, unclassified
LOC_Os03g24280NANA3+13801778..13805015transposon protein, putative, unclassified
LOC_Os03g24290OsAffx.13000.1.S1_at11/113+13807262..13807624hypothetical protein
LOC_Os03g24300Os.55275.1.S1_s_at11/113+13812327..13813438expressed protein
LOC_Os03g24310NANA3+13816198..13816425hypothetical protein
LOC_Os03g24320NANA3+13818030..13818260transposon protein, putative, unclassified
LOC_Os03g24339Os.14522.1.S1_s_at11/113+13819965..13839499PWWP domain containing protein, expressed
LOC_Os03g24339OsAffx.13002.1.S1_at11/113+13819965..13839499PWWP domain containing protein, expressed
LOC_Os03g24339Os.14522.1.S1_at2/113+13819965..13839499PWWP domain containing protein, expressed
LOC_Os03g24339Os.8539.1.S1_at1/113+13819965..13839499PWWP domain containing protein, expressed
LOC_Os03g24339Os.24327.1.A1_at1/113+13819965..13839499PWWP domain containing protein, expressed
LOC_Os03g24339Os.32984.1.S1_at1/113+13819965..13839499PWWP domain containing protein, expressed
LOC_Os03g24339Os.45957.4.S1_x_at1/113+13819965..13839499PWWP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55275.1.S1_s_at--1115--8691Chr03:13812704..13812728 (25 bp)
TGTCCAAGGACTGCGTGTGCGACGC
LOC_Os03g24300
Os.55275.1.S1_s_at--442--8991Chr03:13812653..13812677 (25 bp)
TGAAGCCGCAGCACACGTACGTGGT
LOC_Os03g24300
Os.55275.1.S1_s_at--293--5311Chr03:13812620..13812644 (25 bp)
GAAGGACGTGCAAGATCACCTACCG
LOC_Os03g24300
Os.55275.1.S1_s_at--19--4491Chr03:13812562..13812586 (25 bp)
GCCGGCGAGGCGAATGCAAGCTACT
LOC_Os03g24300
Os.55275.1.S1_s_at--525--5171Chr03:13812547..13812571 (25 bp)
GCAAGCTACTCGATCGTGGTTGATT
LOC_Os03g24300
Os.55275.1.S1_s_at--730--3991Chr03:13812533..13812557 (25 bp)
CGTGGTTGATTACCGAGCTGAGTTT
LOC_Os03g24300
Os.55275.1.S1_s_at--137--10231Chr03:13812511..13812535 (25 bp)
TTTGGGTTGGCGTCACGTCGTTGCT
LOC_Os03g24300
Os.55275.1.S1_s_at--902--7171Chr03:13812471..13812495 (25 bp)
GTCGTCCCTCTGTTTTAACTGTCTG
LOC_Os03g24300
Os.55275.1.S1_s_at--311--9811Chr03:13812456..13812480 (25 bp)
TAACTGTCTGTTTTTCCATTATGGT
LOC_Os03g24300
Os.55275.1.S1_s_at--397--7591Chr03:13812420..13812444 (25 bp)
GGGCATTTATTTGTTCTCCTAATTA
LOC_Os03g24300
Os.55275.1.S1_s_at--549--6151Chr03:13812358..13812382 (25 bp)
GAGGTCCTTGACTATCAGCTAGATT
LOC_Os03g24300
Target Sequence 
TGTCCAAGGACTGCGTGTGCGACGCGCTGATGCGGCTGCCGCCATTCCTGGTGAAGCCGCAGCACACGTACGTGGTGAGG
GTCGGAAGGACGTGCAAGATCACCTACCGCTGCGGCGGTGTCTAGCCGGCGGCGACGTCGCCGCCGGCGAGGCGAATGCA
AGCTACTCGATCGTGGTTGATTACCGAGCTGAGTTTGGGTTGGCGTCACGTCGTTGCTCGCGTCGTCGTCGTCGTCGTCC
CTCTGTTTTAACTGTCTGTTTTTCCATTATGGTTATTCATGTTTGGGCATTTATTTGTTCTCCTAATTAGATTATTATTA
TCAGGTAGATATATATGAAATATGATGAGGTCCTTGACTATCAGCTAGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55275.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis