Browse Element(s) Details


Os.55293.1.S1_at

Description gb:AK107817.1
DB_XREF= gi:32993026
TID=Os.55293.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55293 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-F09, full insert sequence.
FL= gb:AK107817.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0551010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05470Os.57191.1.S1_at11/116+2471739..2472387expressed protein
LOC_Os06g05480Os.5525.1.S1_at11/116+2476594..2477395expressed protein
LOC_Os06g05490NANA6+2481600..2482289hypothetical protein
LOC_Os06g05500NANA6+2483788..2492292transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g05510Os.55293.1.S1_at10/116+2496635..2497203expressed protein
LOC_Os06g05520OsAffx.15273.1.S1_at11/116+2497864..2501888Protein kinase domain containing protein, expressed
LOC_Os06g05520Os.8016.1.S1_a_at11/116+2497864..2501888Protein kinase domain containing protein, expressed
LOC_Os06g05530Os.50965.1.S1_at11/116+2504624..2508041expressed protein
LOC_Os06g05540OsAffx.15274.1.S1_at11/116+2509291..2509872hypothetical protein
LOC_Os06g05550Os.5727.1.S1_at10/116+2514767..2516940GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g05560Os.53045.1.S1_at11/116+2517213..2519939expressed protein
LOC_Os06g05570NANA6+2521000..2521443transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55293.1.S1_at--828--4111Chr06:2497149..2497173 (25 bp)
CGCACATACAATATCCGATCGAGAT
LOC_Os06g05510
Os.55293.1.S1_at--145--531Chr06:2497132..2497156 (25 bp)
ATCGAGATGATGATCGCCGGTGATG
LOC_Os06g05510
Os.55293.1.S1_at--997--9091Chr06:2496951..2496975 (25 bp)
TGCTCTGGTGCCTCCGCGCGTTCGA
LOC_Os06g05510
Os.55293.1.S1_at--692--3911Chr06:2496777..2496801 (25 bp)
CGGCGACCATTTGCGGTGGTTTCTA
LOC_Os06g05510
Os.55293.1.S1_at--834--10271Chr06:2496768..2496792 (25 bp)
TTTGCGGTGGTTTCTACATGCTCGA
LOC_Os06g05510
Os.55293.1.S1_at--83--7511Chr06:2496762..2496786 (25 bp)
GTGGTTTCTACATGCTCGATTTGTT
LOC_Os06g05510
Os.55293.1.S1_at--827--3511Chr06:2496752..2496776 (25 bp)
CATGCTCGATTTGTTTCCTCTCCAT
LOC_Os06g05510
Os.55293.1.S1_at--968--9251Chr06:2496737..2496761 (25 bp)
TCCTCTCCATCGTCGACTAGATAGA
LOC_Os06g05510
Os.55293.1.S1_at--981--9231Chr06:2496732..2496756 (25 bp)
TCCATCGTCGACTAGATAGAATCAA
LOC_Os06g05510
Os.55293.1.S1_at--956--5331Chr06:2496705..2496729 (25 bp)
GAAGATTTAACGTCATTTTATACTT
LOC_Os06g05510
Os.55293.1.S1_at--68--2131Chr06:2496635..2496659 (25 bp)
AAAAATAATATTATCGGTTTCTGCG
NONE
Target Sequence 
CGCACATACAATATCCGATCGAGATGATGATCGCCGGTGATGGCCGTGGCTGGCTGCTGCCGCAGATCGTCATGGCCGTC
GCCTCCGCCGCCGCGCTGGCGCTGGCGCTGTGGCGGCAGCAGCCGGGAGGCAGAGGCGGCAGCGGCGGGCCGGCGGCGAT
CCTCCTCGCCGCGGCGCCGTACGCACTCCTCCTCCTGCTGCTCTGGTGCCTCCGCGCGTTCGAGCGGGCGGCCGGCGCCG
GCGACGCGGCCGCGCAGGGGAGGCTCAGGCTCGCCGTGTGGCTGCTCAGCAGCGCGCTCACCGTCACGTTCGCCGCCAGG
GTCGCGCCGCTGATGCACGGCGCGGCGGCGGTCCTCGTCTGGGCCATGTCGGCGGCGACCATTTGCGGTGGTTTCTACAT
GCTCGATTTGTTTCCTCTCCATCGTCGACTAGATAGAATCAATTGAAGATTTAACGTCATTTTATACTTTTTTTAATCAG
AATATCTGTGAAAATTTGATGAATAATTTGCTTTAAAAATAATATTATCGGTTTCTGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55293.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis