Browse Element(s) Details


Os.55339.1.S1_at

Description gb:AK107899.1
DB_XREF= gi:32993108
TID=Os.55339.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55339 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-F06, full insert sequence.
FL= gb:AK107899.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g570041/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56980OsAffx.23812.1.S1_x_at11/111+33237110..33252182LOC495012 protein, putative, expressed
LOC_Os01g56990Os.16916.1.S1_at9/111+33256049..33259634Regulator of chromosome condensation family protein
LOC_Os01g57004Os.55339.1.S1_at1/111+33261136..33261370NA
LOC_Os01g57020OsAffx.11630.1.S1_at11/111+33266805..33270743expressed protein
LOC_Os01g57020OsAffx.16153.1.S1_at1/111+33266805..33270743expressed protein
LOC_Os01g57030NANA1+33271966..33272172expressed protein
LOC_Os01g57040NANA1+33273310..33273781expressed protein
LOC_Os01g57050OsAffx.2348.1.S1_at11/111+33275255..33275589hypothetical protein
LOC_Os01g57066Os.14351.1.A1_at11/111+33283762..33290138expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55339.1.S1_at--619--5531NONE
GAAACAGAGTCCAGTGATCGACCAG
NONE
Os.55339.1.S1_at--586--7711Chr01:33261144..33261168 (25 bp)
TCGTAGGTACGGCTACTCGTATCCA
LOC_Os01g57004
Os.55339.1.S1_at--20--10191Chr01:33261601..33261625 (25 bp)
TATACACTGTACACGTGCTTGCCTT
NONE
Os.55339.1.S1_at--794--3311Chr01:33261612..33261636 (25 bp)
CACGTGCTTGCCTTTTGTTAAATGT
NONE
Os.55339.1.S1_at--912--351Chr01:33261639..33261663 (25 bp)
ATAATTGTATCGGTCTATAGCTAGA
NONE
Os.55339.1.S1_at--1053--6531Chr01:33261662..33261686 (25 bp)
GATTACAGTACAAGTCCTCCGTTAA
NONE
Os.55339.1.S1_at--184--3731Chr01:33261678..33261702 (25 bp)
CTCCGTTAAGTTCAGGTTCTTCAAG
NONE
Os.55339.1.S1_at--1011--10151Chr01:33261703..33261727 (25 bp)
TATCAGATGCATGCGTGATCCACCT
NONE
Os.55339.1.S1_at--373--231Chr01:33261743..33261767 (25 bp)
ATATTGCATGCACTGGTTGCTCGAT
NONE
Os.55339.1.S1_at--877--6671Chr01:33261758..33261782 (25 bp)
GTTGCTCGATTAACCAAAGGACGTA
NONE
Os.55339.1.S1_at--947--9931Chr01:33261783..33261807 (25 bp)
TACGTTTCTATGTGTATGTCTGCAT
NONE
Target Sequence 
GAAACAGAGTCCAGTGATCGACCAGCATGGATGATCGTAGGTACGGCTACTCGTATCCACCACCCCAAGGGTACTACAAT
GGGCCGCCGGTGATGGCGCCGCCGCAGTACGCGGCTCCGCCGCCGAGGCGGCCGGAGCCGAGCTTCCTCGAAGGATGCCT
TGCTGCTCTCTGCTGCTGCTGCCTCATCGACGAGTGCTGCTGCGACCCATCGGTCATATTTGTGACCTAATTACGGTCAC
AGTGGCGTCTCGACTGGTTGACGAGGACGAACAGTCTGAGTTGAGATATACACTGTACACGTGCTTGCCTTTTGTTAAAT
GTTGATAATTGTATCGGTCTATAGCTAGATTACAGTACAAGTCCTCCGTTAAGTTCAGGTTCTTCAAGTATCAGATGCAT
GCGTGATCCACCTGCAGTGGAAATATTTATATTGCATGCACTGGTTGCTCGATTAACCAAAGGACGTATACGTTTCTATG
TGTATGTCTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55339.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis