Browse Element(s) Details


Os.55348.1.S1_at

Description gb:AK107916.1
DB_XREF= gi:32993125
TID=Os.55348.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55348 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-G11, full insert sequence.
FL= gb:AK107916.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3088411/11ethylene-responsive elongation factor EF-Ts precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30830NANA8+18901116..18902314transposon protein, putative, unclassified, expressed
LOC_Os08g30840OsAffx.5994.1.S1_at10/118+18904105..18905604hypothetical protein
LOC_Os08g30850Os.24676.1.A1_s_at11/118+18910908..18914213YDG/SRA domain containing protein, expressed
LOC_Os08g30850OsAffx.17252.2.S1_x_at5/118+18910908..18914213YDG/SRA domain containing protein, expressed
LOC_Os08g30860OsAffx.17251.1.S1_at11/118+18916072..18916747hypothetical protein
LOC_Os08g30870OsAffx.17252.2.S1_x_at11/118+18918592..18921004YDG/SRA domain containing protein
LOC_Os08g30884Os.55348.1.S1_at11/118+18926844..18933060ethylene-responsive elongation factor EF-Ts precursor, putative, expressed
LOC_Os08g30884OsAffx.29442.1.S1_s_at11/118+18926844..18933060ethylene-responsive elongation factor EF-Ts precursor, putative, expressed
LOC_Os08g30884Os.50847.1.S1_at10/118+18926844..18933060ethylene-responsive elongation factor EF-Ts precursor, putative, expressed
LOC_Os08g30884OsAffx.29442.1.S1_at4/118+18926844..18933060ethylene-responsive elongation factor EF-Ts precursor, putative, expressed
LOC_Os08g30900Os.52835.1.S1_at10/118+18938187..18943536YDG/SRA domain containing protein, expressed
LOC_Os08g30900OsAffx.17252.2.S1_x_at1/118+18938187..18943536YDG/SRA domain containing protein, expressed
LOC_Os08g30910OsAffx.17253.1.S1_at11/118+18952663..18956655YDG/SRA domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006414biological_processtranslational elongation
GO:0005739cellular_componentmitochondrion
GO:0003746molecular_functiontranslation elongation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55348.1.S1_at--1060--3091Chr08:18931240..18931264 (25 bp)
AATAGTATGGATTCAGTGTGCTGTA
LOC_Os08g30884
Os.55348.1.S1_at--200--7471Chr08:18931225..18931249 (25 bp)
GTGTGCTGTACTGATAGAGATATTA
LOC_Os08g30884
Os.55348.1.S1_at--326--6051Chr08:18931209..18931233 (25 bp)
GAGATATTAAGATACTTGTGATCAT
LOC_Os08g30884
Os.55348.1.S1_at--60--10211Chr08:18931185..18931209 (25 bp)
TATTTATGTAACACCCACCACACAG
LOC_Os08g30884
Os.55348.1.S1_at--221--1711Chr08:18931169..18931193 (25 bp)
ACCACACAGCTGCAAGAGCATCCAG
LOC_Os08g30884
Os.55348.1.S1_at--1140--7991Chr08:18931085..18931109 (25 bp)
GGATGGTTGATACGCGATTGGTCGC
LOC_Os08g30884
Os.55348.1.S1_at--736--1651Chr08:18931038..18931062 (25 bp)
AGCGCTACCCATCTAGTCTCAGTAT
LOC_Os08g30884
Os.55348.1.S1_at--503--4331Chr08:18931030..18931054 (25 bp)
CCATCTAGTCTCAGTATTTATACGT
LOC_Os08g30884
Os.55348.1.S1_at--1092--1671Chr08:18930995..18931019 (25 bp)
ACCACAATACAAAGTTTATACGCAT
LOC_Os08g30884
Os.55348.1.S1_at--419--6892Chr08:18930916..18930940 (25 bp)
GTATATATACCCTACATTTTTTATA
LOC_Os08g30884
Os.55348.1.S1_at--426--8771Chr08:18930891..18930915 (25 bp)
TGTATACGCATACACTTTTGATGTA
LOC_Os08g30884
Target Sequence 
AATAGTATGGATTCAGTGTGCTGTACTGATAGAGATATTAAGATACTTGTGATCATATTTATGTAACACCCACCACACAG
CTGCAAGAGCATCCAGCCATCCACCTGACTAAATCACCACCACGACCACCACCACCCCCAAGCCAATCCAGTCGGGGATG
GTTGATACGCGATTGGTCGCGCGCCGGCACACCCGCGCGACCAGCGCTACCCATCTAGTCTCAGTATTTATACGTTTGTA
TATATACCACAATACAAAGTTTATACGCATGTATATGAGGTATATATACATACGTATATAGACGATAAAATATGTGTAAA
CTTTGTATATATACCCTACATTTTTTATATGTATACGCATACACTTTTGATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55348.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis