Browse Element(s) Details


Os.55420.1.A1_at

Description gb:AK108054.1
DB_XREF= gi:32993263
TID=Os.55420.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55420 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-137-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-H08, full insert sequence.
FL= gb:AK108054.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3852011/11Leucine Rich Repeat family protein, expressed
LOC_Os11g3705011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38480Os.18814.1.S1_at11/1111+22298018..22300793expressed protein
LOC_Os11g38480OsAffx.31368.1.S1_x_at2/1111+22298018..22300793expressed protein
LOC_Os11g38490OsAffx.31370.1.S1_at11/1111+22312415..22314570hypothetical protein
LOC_Os11g38490Os.54151.1.S1_x_at2/1111+22312415..22314570hypothetical protein
LOC_Os11g38500Os.54585.1.S1_at8/1111+22315258..22316500F-box domain containing protein
LOC_Os11g38510NANA11+22319039..22319331hypothetical protein
LOC_Os11g38520Os.55420.1.A1_at11/1111+22321960..22326300Leucine Rich Repeat family protein, expressed
LOC_Os11g38520Os.55420.1.A1_x_at11/1111+22321960..22326300Leucine Rich Repeat family protein, expressed
LOC_Os11g38520Os.51985.1.S1_at7/1111+22321960..22326300Leucine Rich Repeat family protein, expressed
LOC_Os11g38520Os.18929.1.S1_s_at1/1111+22321960..22326300Leucine Rich Repeat family protein, expressed
LOC_Os11g38520OsAffx.31368.1.S1_x_at1/1111+22321960..22326300Leucine Rich Repeat family protein, expressed
LOC_Os11g38530NANA11+22327013..22329755retrotransposon protein, putative, unclassified
LOC_Os11g38540NANA11+22330758..22336895retrotransposon protein, putative, unclassified
LOC_Os11g38550Os.47463.1.S1_x_at5/1111+22341181..22343088transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g38550Os.14491.2.S1_x_at3/1111+22341181..22343088transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g38560NANA11+22344701..22345897transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g38570NANA11+22350582..22350948NA

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55420.1.A1_at--803--4092Chr11:21371159..21371183 (25 bp)
CGACTGAGGTATGGCGTTGAGATCC
LOC_Os11g37050
Os.55420.1.A1_at--278--10452Chr11:21371328..21371352 (25 bp)
TTGAGCCCCCTTCTCTGGACGACTA
LOC_Os11g37050
Os.55420.1.A1_at--1075--532Chr11:21371417..21371441 (25 bp)
ATCGCCATTGTAGCACCAGATGCAG
LOC_Os11g37050
Os.55420.1.A1_at--55--4452Chr11:21371420..21371444 (25 bp)
GCCATTGTAGCACCAGATGCAGATA
LOC_Os11g37050
Os.55420.1.A1_at--137--472Chr11:21371434..21371458 (25 bp)
AGATGCAGATAATAAGGAAGTCCTT
LOC_Os11g37050
Os.55420.1.A1_at--361--4052Chr11:21371550..21371574 (25 bp)
CGCTTCGACCCAAGGAGGTCCTCTA
LOC_Os11g37050
Os.55420.1.A1_at--63--2752Chr11:21371601..21371625 (25 bp)
AAGAAGCGGCCGGATCGCAGAAGCA
LOC_Os11g37050
Os.55420.1.A1_at--1130--3952Chr11:21371611..21371635 (25 bp)
CGGATCGCAGAAGCAGCCCACAGAT
LOC_Os11g37050
Os.55420.1.A1_at--1130--5032Chr11:21371617..21371641 (25 bp)
GCAGAAGCAGCCCACAGATCAAGGT
LOC_Os11g37050
Os.55420.1.A1_at--622--1512Chr11:21371622..21371646 (25 bp)
AGCAGCCCACAGATCAAGGTGAATG
LOC_Os11g37050
Os.55420.1.A1_at--947--2432Chr11:21371686..21371710 (25 bp)
AAAATGTGGCATTTACCGTAGCAAA
LOC_Os11g37050
Target Sequence 
CGACTGAGGTATGGCGTTGAGATCCCANCCACGACGAANGCGGNCCGCACNTGATGCAACAGGTGGCTATGNTGCTGGGN
ACGATGAAGAAGAAGATGAANGATGACCGCGAANGGNCAATTNGCTGTGGCAACACNAACGTTGNCCCATCATTCTGCTC
GATGNCCCGTCTTTGAGCCCCCTTCTCTGGACGACTACGTGNAGNCNAAGTTATTGGAGTGGATTGNGGGAGTTCCTGGA
AACGCNATCGTGACGTTGTCNATCGCCATTGTAGCACCAGATGCAGATAATAAGGAAGTCCTTGCTATTGCACATGAAAC
TTTGGTTGCTCCANACTACTACNACCGTCGCAGTATCATGGTCAACGTCCCGGCGGTGCACCTTGATNTTTTACCGCTTC
GACCCAAGGAGGTCCTCTACTACATCTTGCGGGAGCTCGAGCGGGAAGAAGCGGCCGGATCGCAGAAGCAGCCCACAGAT
CAAGGTGAATGGGAGGAGGAGGATCCTGACCCTTGGCAAGATTACTACAAAAAATGTGGCATTTACCGTAGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55420.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis