Browse Element(s) Details


OsAffx.31370.1.S1_at

Description tigr:9639.m03496
TID=OsAffx.31370.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3849011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38470OsAffx.31369.1.S1_at8/1111+22293671..22294339hypothetical protein
LOC_Os11g38480Os.18814.1.S1_at11/1111+22298018..22300793expressed protein
LOC_Os11g38480OsAffx.31368.1.S1_x_at2/1111+22298018..22300793expressed protein
LOC_Os11g38490OsAffx.31370.1.S1_at11/1111+22312415..22314570hypothetical protein
LOC_Os11g38490Os.54151.1.S1_x_at2/1111+22312415..22314570hypothetical protein
LOC_Os11g38500Os.54585.1.S1_at8/1111+22315258..22316500F-box domain containing protein
LOC_Os11g38510NANA11+22319039..22319331hypothetical protein
LOC_Os11g38520Os.55420.1.A1_at11/1111+22321960..22326300Leucine Rich Repeat family protein, expressed
LOC_Os11g38520Os.55420.1.A1_x_at11/1111+22321960..22326300Leucine Rich Repeat family protein, expressed
LOC_Os11g38520Os.51985.1.S1_at7/1111+22321960..22326300Leucine Rich Repeat family protein, expressed
LOC_Os11g38520Os.18929.1.S1_s_at1/1111+22321960..22326300Leucine Rich Repeat family protein, expressed
LOC_Os11g38520OsAffx.31368.1.S1_x_at1/1111+22321960..22326300Leucine Rich Repeat family protein, expressed
LOC_Os11g38530NANA11+22327013..22329755retrotransposon protein, putative, unclassified
LOC_Os11g38540NANA11+22330758..22336895retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31370.1.S1_at--967--4191Chr11:22313874..22313898 (25 bp)
CCCCACTGTTCAGCTTGAAATTCAT
LOC_Os11g38490
OsAffx.31370.1.S1_at--900--1051Chr11:22314024..22314048 (25 bp)
AGGGTGATGACGCATTCAATGGACA
LOC_Os11g38490
OsAffx.31370.1.S1_at--217--2431Chr11:22314109..22314133 (25 bp)
AACAATGACCTATGCCCGTTACTGT
LOC_Os11g38490
OsAffx.31370.1.S1_at--879--6771Chr11:22314126..22314150 (25 bp)
GTTACTGTTCTGCACGAGATCATGT
LOC_Os11g38490
OsAffx.31370.1.S1_at--1142--6031Chr11:22314141..22314165 (25 bp)
GAGATCATGTTCGATCCGGCAAGAA
LOC_Os11g38490
OsAffx.31370.1.S1_at--1081--2191Chr11:22314168..22314192 (25 bp)
ACAAAGAGATATGTCACCCCTGCTT
LOC_Os11g38490
OsAffx.31370.1.S1_at--3--7111Chr11:22314180..22314204 (25 bp)
GTCACCCCTGCTTTTTCAAATTTGA
LOC_Os11g38490
OsAffx.31370.1.S1_at--20--2871Chr11:22314207..22314231 (25 bp)
AAGTGGTTCCAATCCACAAGAACGA
LOC_Os11g38490
OsAffx.31370.1.S1_at--623--2471Chr11:22314359..22314383 (25 bp)
AACACCGATGGGTTCTTGTGCCCAT
LOC_Os11g38490
OsAffx.31370.1.S1_at--838--551Chr11:22314382..22314406 (25 bp)
ATCCTCTGGTTGCACTGTCAGGGCG
LOC_Os11g38490
OsAffx.31370.1.S1_at--963--4351Chr11:22314430..22314454 (25 bp)
CCACCACCTGTTTTGCCATGAGAAG
LOC_Os11g38490
Target Sequence 
CCCCACTGTTCAGCTTGAAATTCATAAGGGTGATGACGCATTCAATGGACAGAATTTTGGTCTTGATGTGATTTTCGACG
AGTCCATGGATAATAATAAAGAGGATGAGGTAACAATGACCTATGCCCGTTACTGTTCTGCACGAGATCATGTTCGATCC
GGCAAGAAAAACAAAGAGATATGTCACCCCTGCTTTTTCAAATTTGATCAAGTGGTTCCAATCCACAAGAACGAGATAAA
AAGCCATATCTCCAATAAACACAACACCGATGGGTTCTTGTGCCCATCCTCTGGTTGCACTGTCAGGGCGTGCACATTGG
GGGATATCGGGCTCCACCACCTGTTTTGCCATGAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31370.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis