Browse Element(s) Details


OsAffx.31369.1.S1_at

Description tigr:9639.m03493
TID=OsAffx.31369.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g384708/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38450OsAffx.7341.1.S1_at11/1111+22267275..22270808hypothetical protein
LOC_Os11g38450OsAffx.31372.1.S1_at2/1111+22267275..22270808hypothetical protein
LOC_Os11g38456Os.47463.1.S1_x_at5/1111+22276068..22279789transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g38456Os.14491.2.S1_x_at4/1111+22276068..22279789transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g38462NANA11+22282777..22286109transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g38470OsAffx.31369.1.S1_at8/1111+22293671..22294339hypothetical protein
LOC_Os11g38480Os.18814.1.S1_at11/1111+22298018..22300793expressed protein
LOC_Os11g38480OsAffx.31368.1.S1_x_at2/1111+22298018..22300793expressed protein
LOC_Os11g38490OsAffx.31370.1.S1_at11/1111+22312415..22314570hypothetical protein
LOC_Os11g38490Os.54151.1.S1_x_at2/1111+22312415..22314570hypothetical protein
LOC_Os11g38500Os.54585.1.S1_at8/1111+22315258..22316500F-box domain containing protein
LOC_Os11g38510NANA11+22319039..22319331hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31369.1.S1_at--967--3891Chr11:22294285..22294309 (25 bp)
CTGGTGCAGATTGAGGTGGTGATGG
LOC_Os11g38470
OsAffx.31369.1.S1_at--285--1951Chr11:22294245..22294269 (25 bp)
ACGGCGATGGCCTCATCGTCTGTGG
LOC_Os11g38470
OsAffx.31369.1.S1_at--187--3551Chr11:22294234..22294256 (23 bp)
CATCGTCTGTGGCACTTTACCAGTG
LOC_Os11g38470
OsAffx.31369.1.S1_at--945--9391Chr11:22294234..22294254 (21 bp)
TCGTCTGTGGCACTTTACCAGTGTA
LOC_Os11g38470
OsAffx.31369.1.S1_at--712--4011Chr11:22294234..22294253 (20 bp)
CGTCTGTGGCACTTTACCAGTGTAT
LOC_Os11g38470
OsAffx.31369.1.S1_at--240--7191NONE
GTCTGTGGCACTTTACCAGTGTATG
NONE
OsAffx.31369.1.S1_at--906--3891Chr11:22293731..22294250 (25 bp)
CTGTGGCACTTTACCAGTGTATGAA
LOC_Os11g38470
OsAffx.31369.1.S1_at--144--7531Chr11:22293729..22294248 (25 bp)
GTGGCACTTTACCAGTGTATGAAAC
LOC_Os11g38470
OsAffx.31369.1.S1_at--215--8251NONE
GGCACTTTACCAGTGTATGAAACAA
NONE
OsAffx.31369.1.S1_at--845--3311NONE
CACTTTACCAGTGTATGAAACAAAT
NONE
OsAffx.31369.1.S1_at--578--672Chr11:22351835..22351859 (25 bp)
ATGAAACAAATAGAGCTTCTCACTC
NONE
Target Sequence 
CTGGTGCAGATTGAGGTGGTGATGGTGGATATGGAGCTCGACGGCGATGGCCTCATCGTCTGTGGCACTTTACCAGTGTA
TGAAACAAATAGAGCTTCTCACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31369.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis