Browse Element(s) Details


Os.55421.1.S1_at

Description gb:AK108059.1
DB_XREF= gi:32993268
TID=Os.55421.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55421 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-138-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-138-A11, full insert sequence.
FL= gb:AK108059.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0655011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06520OsAffx.19521.1.S1_at10/1112+3152108..3155798bZIP transcriptional activator RSG, putative, expressed
LOC_Os12g06520Os.19640.1.S1_at10/1112+3152108..3155798bZIP transcriptional activator RSG, putative, expressed
LOC_Os12g06520Os.53732.1.S1_a_at1/1112+3152108..3155798bZIP transcriptional activator RSG, putative, expressed
LOC_Os12g06530Os.46012.2.S1_x_at9/1112+3158983..3164652retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g06530Os.46012.3.S1_x_at6/1112+3158983..3164652retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g06530Os.27088.1.A1_x_at5/1112+3158983..3164652retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g06540OsAffx.19522.1.S1_at11/1112+3169550..3171222GRAS family transcription factor containing protein
LOC_Os12g06550Os.55421.1.S1_at11/1112+3174209..3177222expressed protein
LOC_Os12g06560OsAffx.31618.1.S1_at11/1112+3178993..3183721expressed protein
LOC_Os12g06570OsAffx.31619.1.S1_at11/1112+3185850..3189005Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os12g06580NANA12+3191370..3193178retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g06590NANA12+3194787..3195905retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g06600NANA12+3197665..3199653retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g06610Os.11568.2.S1_at11/1112+3200635..3206795Uncharacterised protein family containing protein, expressed
LOC_Os12g06610Os.11568.1.A1_x_at11/1112+3200635..3206795Uncharacterised protein family containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55421.1.S1_at--637--831Chr12:3176136..3176160 (25 bp)
ATGGAGCTGCGCTGCTGGACTTACA
LOC_Os12g06550
Os.55421.1.S1_at--388--10851Chr12:3176277..3176301 (25 bp)
TTGGGACTTCTTTTCTGCGATCCGT
LOC_Os12g06550
Os.55421.1.S1_at--172--4631Chr12:3176293..3176317 (25 bp)
GCGATCCGTTCATTGAGAAGCCCAA
LOC_Os12g06550
Os.55421.1.S1_at--401--5671Chr12:3176321..3176345 (25 bp)
GACTTATGTGGCTCTTCCGGAAGGC
LOC_Os12g06550
Os.55421.1.S1_at--982--4691Chr12:3176393..3176417 (25 bp)
GCGGCGTTGCGTCAAGATCAGCCAA
LOC_Os12g06550
Os.55421.1.S1_at--1041--911Chr12:3176452..3176476 (25 bp)
AGGCTTGCTTATGGAGTTTACTCTA
LOC_Os12g06550
Os.55421.1.S1_at--978--4511Chr12:3176491..3176515 (25 bp)
GCCCCGAGTGGCAGCTTGAGTACAA
LOC_Os12g06550
Os.55421.1.S1_at--625--2931Chr12:3176514..3176538 (25 bp)
AAGGCACCTCTTGCGGACATATGGG
LOC_Os12g06550
Os.55421.1.S1_at--933--2791Chr12:3176544..3176568 (25 bp)
AAGATCTACAAGACCTCCGGGCTGA
LOC_Os12g06550
Os.55421.1.S1_at--115--10131Chr12:3176594..3176618 (25 bp)
TATGATTGACCCGACAGACTGTGCT
LOC_Os12g06550
Os.55421.1.S1_at--1127--5911Chr12:3176690..3176714 (25 bp)
GAGCTTGGAGATGCGCACTGACTTC
LOC_Os12g06550
Target Sequence 
ATGGAGCTGCGCTGCTGGACTTACACCTCAGGTTCCCAGTGGGTTGTCAAGCCCCTTACCAACTGCTTGCAACACCCAGT
TTGGGGCAGTCAAGGCGGTGTGCTAAGCCATATGAACAAGATTTGGTTCGTCGACCTGCCCTTGGGACTTCTTTTCTGCG
ATCCGTTCATTGAGAAGCCCAAGCTGACTTATGTGGCTCTTCCGGAAGGCTGCCTTATGCTGGTCCCCGACATCAGATCG
CGTCACAATCTTGAGAAGCGGCGTTGCGTCAAGATCAGCCAAGACAAGATATGCTACGTTCAGTTAGATGAAGGAGAGGC
TTGCTTATGGAGTTTACTCTATTCTGAGAGTGAGAGCCCCGAGTGGCAGCTTGAGTACAAGGCACCTCTTGCGGACATAT
GGGGCGACAAGATCTACAAGACCTCCGGGCTGACGCCGGGCAAAGTTCCTGCCATTGCTATGATTGACCCGACAGACTGT
GCTGTACTATACTTTATAGAACAAGATGTGCTGTTCTCTTTTGACATACGTTCCAAGAGAGTTTTGATGTCCAAGAGCTT
GGAGATGCGCACTGACTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55421.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis