Browse Element(s) Details


Os.55507.1.S1_x_at

Description gb:AK108222.1
DB_XREF= gi:32993431
TID=Os.55507.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55507 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-140-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-E11, full insert sequence.
FL= gb:AK108222.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5598010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55930OsAffx.24888.1.S1_at11/112+34231867..34232601hypothetical protein
LOC_Os02g55930OsAffx.24888.1.S1_x_at11/112+34231867..34232601hypothetical protein
LOC_Os02g55930OsAffx.12939.2.S1_at1/112+34231867..34232601hypothetical protein
LOC_Os02g55940Os.9947.1.S1_at10/112+34233082..34236231ribosomal protein S15 containing protein, expressed
LOC_Os02g55950Os.39653.1.S1_s_at11/112+34236941..34245178Mak10 subunit, NatC N-terminal acetyltransferase family protein, expressed
LOC_Os02g55959NANA2+34248460..34248929NA
LOC_Os02g55970Os.17247.1.S1_at11/112+34249895..34254683Clathrin assembly protein, putative, expressed
LOC_Os02g55980Os.55507.1.S1_at10/112+34254953..34257219expressed protein
LOC_Os02g55980Os.55507.1.S1_x_at10/112+34254953..34257219expressed protein
LOC_Os02g55990Os.8229.1.S1_at11/112+34258114..34259944Synaptobrevin family protein, expressed
LOC_Os02g56000Os.145.1.S1_a_at11/112+34260098..3426405826S protease regulatory subunit 6A homolog, putative, expressed
LOC_Os02g56010Os.49119.1.S1_at11/112+34268532..34271455UDP-rhamnose:rhamnosyltransferase, putative, expressed
LOC_Os02g56010OsAffx.19720.2.S1_s_at1/112+34268532..34271455UDP-rhamnose:rhamnosyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55507.1.S1_x_at--609--10611NONE
TTCTGGCCTGTGCTCTGTATAACAA
NONE
Os.55507.1.S1_x_at--1052--3771Chr02:34255882..34255906 (25 bp)
CTCTGTATAACAACTGGTGGCCAAT
LOC_Os02g55980
Os.55507.1.S1_x_at--215--7731Chr02:34255790..34255891 (25 bp)
GGTGGCCAATGCTAACAGTTCTTAT
LOC_Os02g55980
Os.55507.1.S1_x_at--506--9531Chr02:34255742..34255766 (25 bp)
TCATATTTTTCCTGGGCTCCAACAG
LOC_Os02g55980
Os.55507.1.S1_x_at--291--2491Chr02:34255722..34255746 (25 bp)
AACAGCCCCTCAATGATGTCTAATG
LOC_Os02g55980
Os.55507.1.S1_x_at--86--6251Chr02:34255274..34255298 (25 bp)
GATGGAGCTATCTTCTTTCCTGGTC
LOC_Os02g55980
Os.55507.1.S1_x_at--781--7231Chr02:34255243..34255267 (25 bp)
GTCGCGATCCTGTGGCTGATTCAAA
LOC_Os02g55980
Os.55507.1.S1_x_at--294--1391Chr02:34255208..34255232 (25 bp)
AGACGAGTACAGCAGCGCGTTCTGA
LOC_Os02g55980
Os.55507.1.S1_x_at--719--2131Chr02:34255114..34255138 (25 bp)
ACAGATACTGTCGAAGCCTTGGCTC
LOC_Os02g55980
Os.55507.1.S1_x_at--640--1311Chr02:34255019..34255043 (25 bp)
AGATGGTTTGGTTATGTCCTCCGGC
LOC_Os02g55980
Os.55507.1.S1_x_at--123--7251Chr02:34255004..34255028 (25 bp)
GTCCTCCGGCTGATTTCAACTTGAA
LOC_Os02g55980
Target Sequence 
TTCTGGCCTGTGCTCTGTATAACAACTGGTGGCCAATGCTAACAGTTCTTATGTACCTCATACTACCAATGCCCCTCATA
TTTTTCCTGGGCTCCAACAGCCCCTCAATGATGTCTAATGATGGCGATACTTGGGTGANCTTCACAAAATTCTTGACGGG
CGCATCNATAGTGGGGAGCATCGCCATCCCGTCGATCCTGAAGCATGCCGGCGTCATTGGATGGGGAGCGCTCACGATGG
AGCTATCTTCTTTCCTGGTCTTTGGCGTCGCGATCCTGTGGCTGATTCAAATGAACAGCGAAGACGAGTACAGCAGCGCG
TTCTGATCGATCGGTACGCCCCTTCTCTTGCCCGCGTGGTTAATACCTTGCGATGAAGCANGCCGTAAACTTGTGTACAG
ATACTGTCGAAGCCTTGGCTCCTGTGGTCCCATTCANTANCGTGAACCCTTACATGTTCAGATTGCATGTACAAATTTGA
ANTTCGGTGTAAGATGGTTTGGTTATGTCCTCCGGCTGATTTCAACTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55507.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis