Browse Element(s) Details


Os.55509.1.S1_at

Description gb:AK108225.1
DB_XREF= gi:32993434
TID=Os.55509.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55509 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-140-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-F03, full insert sequence.
FL= gb:AK108225.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3424011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34210Os.17959.1.S1_a_at11/118+21312945..21317964NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, putative, expressed
LOC_Os08g34220Os.10424.1.S1_at11/118+21318122..21320859Omega-6 fatty acid desaturase, chloroplast precursor, putative, expressed
LOC_Os08g34230OsAffx.22759.1.S1_at5/118+21324165..21326573retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g34240Os.55509.1.S1_at11/118+21333909..21335751Protein kinase domain containing protein, expressed
LOC_Os08g34249OsAffx.29504.1.S1_at11/118+21341722..21342035inhibitor I family protein
LOC_Os08g34258OsAffx.29504.1.S1_at11/118+21354724..21355037inhibitor I family protein

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005829cellular_componentcytosol
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55509.1.S1_at--447--6091Chr08:21335432..21335456 (25 bp)
GAGTACCGCTCATTCTGCAGCGAGG
LOC_Os08g34240
Os.55509.1.S1_at--912--8851Chr08:21335525..21335549 (25 bp)
TGATGCCACCATTGTTAGCGTCCAA
LOC_Os08g34240
Os.55509.1.S1_at--118--6791Chr08:21335538..21335562 (25 bp)
GTTAGCGTCCAAAGTCATTGTGTCA
LOC_Os08g34240
Os.55509.1.S1_at--779--9591Chr08:21335552..21335576 (25 bp)
TCATTGTGTCACAGTAGCCGATGCT
LOC_Os08g34240
Os.55509.1.S1_at--677--2131Chr08:21335562..21335586 (25 bp)
ACAGTAGCCGATGCTGTTCTTCCTC
LOC_Os08g34240
Os.55509.1.S1_at--1054--9251Chr08:21335585..21335609 (25 bp)
TCCTCCTGTGCTTGATTCGATAGCG
LOC_Os08g34240
Os.55509.1.S1_at--86--4931Chr08:21335594..21335618 (25 bp)
GCTTGATTCGATAGCGACGTGCATG
LOC_Os08g34240
Os.55509.1.S1_at--91--5771Chr08:21335609..21335633 (25 bp)
GACGTGCATGAACTAGTATCGCTGT
LOC_Os08g34240
Os.55509.1.S1_at--92--2531Chr08:21335619..21335643 (25 bp)
AACTAGTATCGCTGTTTGGGTGGTG
LOC_Os08g34240
Os.55509.1.S1_at--400--2271Chr08:21335662..21335686 (25 bp)
AAATCTGTATCTCTGCCTCAAAAGC
LOC_Os08g34240
Os.55509.1.S1_at--1034--6811Chr08:21335723..21335747 (25 bp)
GTTTTTGTGATGGTCTTTGCTTACA
LOC_Os08g34240
Target Sequence 
GAGTACCGCTCATTCTGCAGCGAGGAGCTCCGGCCGGCGCTCCAGGACATCGTCTGGGGCGCCGCCGCCGACCCAACGCC
GACCGCCGCCGTCTGATGCCACCATTGTTAGCGTCCAAAGTCATTGTGTCACAGTAGCCGATGCTGTTCTTCCTCCTCCT
GTGCTTGATTCGATAGCGACGTGCATGAACTAGTATCGCTGTTTGGGTGGTGGGGGCAGTTGGCAAGAACAAATCTGTAT
CTCTGCCTCAAAAGCAACAGCATTTTTTTTTCTTTTGCACAAGTTGCAATTGTTTTTGTGATGGTCTTTGCTTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55509.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis