Browse Element(s) Details


Os.55511.1.S1_at

Description gb:AK108230.1
DB_XREF= gi:32993439
TID=Os.55511.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55511 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-140-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-G01, full insert sequence.
FL= gb:AK108230.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4552011/11Integral membrane protein, expressed
LOC_Os06g049301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45470Os.47710.2.A1_s_at11/114+26684818..26689595Vacuolar processing enzyme, beta-isozyme precursor, putative, expressed
LOC_Os04g45470Os.27527.1.S1_at11/114+26684818..26689595Vacuolar processing enzyme, beta-isozyme precursor, putative, expressed
LOC_Os04g45470Os.47710.1.A1_at9/114+26684818..26689595Vacuolar processing enzyme, beta-isozyme precursor, putative, expressed
LOC_Os04g45480Os.49266.1.A1_at11/114+26694237..26701555stress-induced protein sti1, putative, expressed
LOC_Os04g45480Os.16317.1.S1_at9/114+26694237..26701555stress-induced protein sti1, putative, expressed
LOC_Os04g45490Os.7994.1.S1_at11/114+26698804..26701555Elongation factor G, chloroplast precursor, putative, expressed
LOC_Os04g45500OsAffx.14277.1.S1_at11/114+26704183..26704923hypothetical protein
LOC_Os04g45510OsAffx.30150.1.S1_at3/114+26706912..26707253hypothetical protein
LOC_Os04g45520Os.55511.1.S1_at11/114+26712380..26713541Integral membrane protein, expressed
LOC_Os04g45530OsAffx.4098.1.S1_at11/114+26718949..26719543hypothetical protein
LOC_Os04g45540NANA4+26721433..26727660retrotransposon protein, putative, unclassified
LOC_Os04g45550NANA4+26728507..26731261retrotransposon protein, putative, unclassified
LOC_Os04g45560NANA4+26734313..26734822hypothetical protein
LOC_Os04g45570Os.21851.1.S1_at11/114+26735390..26741178expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55511.1.S1_at--201--4071Chr04:26712932..26712956 (25 bp)
CGAGGGAGAAACTGCCGAGCCCGAC
LOC_Os04g45520
Os.55511.1.S1_at--926--4031Chr04:26712857..26712881 (25 bp)
CGTTGCTGACGAGCGGGTTCATCAA
LOC_Os04g45520
Os.55511.1.S1_at--73--4551Chr04:26712746..26712770 (25 bp)
GCGCCAACATGGTGAGGTCCGGCAC
LOC_Os04g45520
Os.55511.1.S1_at--202--7311Chr04:26712675..26712699 (25 bp)
GTGCTCCGGCTGTTCGCGACGATCT
LOC_Os04g45520
Os.55511.1.S1_at--455--4611Chr04:26712660..26712684 (25 bp)
GCGACGATCTTTCACGGCATGAACA
LOC_Os04g45520
Os.55511.1.S1_at--178--4671Chr04:26712614..26712638 (25 bp)
GCGTGTGACGCAGAAATCGATCTAT
LOC_Os04g45520
Os.55511.1.S1_at--91--3132Chr06:2170480..2170616 (25 bp)
AATTAACTACTCTTGGTTTGCCAGT
LOC_Os06g04930
Os.55511.1.S1_at--1125--7851Chr04:26712526..26712550 (25 bp)
GGTTTGCCAGTAGTACTGTACCTAG
LOC_Os04g45520
Os.55511.1.S1_at--76--8751Chr04:26712510..26712534 (25 bp)
TGTACCTAGTGGCTGATTATTAACT
LOC_Os04g45520
Os.55511.1.S1_at--578--10171Chr04:26712493..26712517 (25 bp)
TATTAACTAGCGAATCCCTGGATAC
LOC_Os04g45520
Os.55511.1.S1_at--985--5251Chr04:26712482..26712506 (25 bp)
GAATCCCTGGATACCGAACTGGGAA
LOC_Os04g45520
Target Sequence 
CGAGGGAGAAACTGCCGAGCCCGACGCAGGCCGCGTTCGCGTCGGCGCTGGCGTTCGCGATCGGCGGCCTCCTGCCGTTG
CTGACGAGCGGGTTCATCAAGCCGTGGGGCCCCAGGGTCGGCGTCGTGTGCGCCGCGAGCAGCGTCGGGCTGGCCGGCTT
CGGCGCCGCGGGCGGGTACCTCGGCGGCGCCAACATGGTGAGGTCCGGCACTAGGGTCCTCCTCGGCGGCTGGCTCGCCA
TGCTCATCACCTACGCCGTGCTCCGGCTGTTCGCGACGATCTTTCACGGCATGAACATCTCGTCGTCGGCGTGATGATGC
GTGTGACGCAGAAATCGATCTATCTGGAGATGAAAAAGAAAATAATCAAGGGGTTGTGCTAGCTAGCTGTTTAATTAACT
ACTCTTGGTTTGCCAGTAGTACTGTACCTAGTGGCTGATTATTAACTAGCGAATCCCTGGATACCGAACTGGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55511.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis