Browse Element(s) Details


Os.55614.1.S1_at

Description gb:AK108418.1
DB_XREF= gi:32993627
TID=Os.55614.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.55614 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-142-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-H10, full insert sequence.
FL= gb:AK108418.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5892011/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58890Os.48131.1.S1_s_at11/114+34812136..34813565expressed protein
LOC_Os04g58890OsAffx.14474.1.S1_at11/114+34812136..34813565expressed protein
LOC_Os04g58900Os.7083.1.S1_at11/114+34815800..34819282hydrolase, NUDIX family protein, expressed
LOC_Os04g58910Os.15783.1.S2_at11/114+34820857..34824722Protein kinase domain containing protein, expressed
LOC_Os04g58910Os.15783.1.S1_at11/114+34820857..34824722Protein kinase domain containing protein, expressed
LOC_Os04g58920Os.55614.1.S1_at11/114+34835503..34837093U-box domain containing protein, expressed
LOC_Os04g58929NANA4+34840636..34841335NA
LOC_Os04g58940OsAffx.26660.1.S1_at11/114+34844939..34845480expressed protein
LOC_Os04g58960Os.47374.1.S1_at11/114+34848235..34855464zinc finger protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55614.1.S1_at--894--5871Chr04:34835746..34835770 (25 bp)
GAGCGTGGAGGAACTCGCCCTGCTT
LOC_Os04g58920
Os.55614.1.S1_at--829--1811Chr04:34835698..34835722 (25 bp)
ACCCTTCTTGCTGATCGAATTCTGA
LOC_Os04g58920
Os.55614.1.S1_at--471--5211Chr04:34835682..34835706 (25 bp)
GAATTCTGATTCATGATCACCGGCC
LOC_Os04g58920
Os.55614.1.S1_at--1066--8831Chr04:34835669..34835693 (25 bp)
TGATCACCGGCCTCATCACTAGCTA
LOC_Os04g58920
Os.55614.1.S1_at--149--391Chr04:34835655..34835679 (25 bp)
ATCACTAGCTAGCTACCAACATACA
LOC_Os04g58920
Os.55614.1.S1_at--869--9971Chr04:34835642..34835666 (25 bp)
TACCAACATACAGCACAGAGAGAAT
LOC_Os04g58920
Os.55614.1.S1_at--11--2071Chr04:34835612..34835636 (25 bp)
ACTTGTTCGATTCTTCCTTTCGCTC
LOC_Os04g58920
Os.55614.1.S1_at--573--4291Chr04:34835597..34835621 (25 bp)
CCTTTCGCTCGATTAATTTTATTGA
LOC_Os04g58920
Os.55614.1.S1_at--972--6031Chr04:34835569..34835593 (25 bp)
GAGATCGTTCGATGTAGTCCTATGA
LOC_Os04g58920
Os.55614.1.S1_at--132--3291Chr04:34835542..34835566 (25 bp)
CAAAGTGTACAGATCGACGCAATAG
LOC_Os04g58920
Os.55614.1.S1_at--133--5471Chr04:34835515..34835539 (25 bp)
GAACTAAATCATGCGCGAGCTTTTT
LOC_Os04g58920
Target Sequence 
GAGCGTGGAGGAACTCGCCCTGCTTGCAGCCTCACCTCCAGGCCCTCTACCCTTCTTGCTGATCGAATTCTGATTCATGA
TCACCGGCCTCATCACTAGCTAGCTACCAACATACAGCACAGAGAGAATTGAACACTTGTTCGATTCTTCCTTTCGCTCG
ATTAATTTTATTGAGTTGAGATCGTTCGATGTAGTCCTATGAATCAAAGTGTACAGATCGACGCAATAGATGAACTAAAT
CATGCGCGAGCTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55614.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis