Browse Element(s) Details


Os.55643.1.S1_at

Description gb:AK108473.1
DB_XREF= gi:32993682
TID=Os.55643.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55643 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-143-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-E08, full insert sequence.
FL= gb:AK108473.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4644011/11DRE binding factor 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46400Os.54929.1.S1_at11/114+27298110..27299245AP2 domain containing protein, expressed
LOC_Os04g46410OsAffx.14299.2.S1_at11/114+27304305..27305048AP2 domain containing protein, expressed
LOC_Os04g46420OsAffx.26484.1.S1_at10/114+27306715..27306997hypothetical protein
LOC_Os04g46430OsAffx.26637.1.S1_x_at4/114+27310208..27311194hypothetical protein
LOC_Os04g46430OsAffx.26637.2.S1_x_at2/114+27310208..27311194hypothetical protein
LOC_Os04g46440Os.55643.1.S1_at11/114+27320783..27321770DRE binding factor 2, putative, expressed
LOC_Os04g46450Os.15343.1.S1_at10/114+27332264..27340546Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g46460Os.26493.1.S1_a_at11/114+27344135..27347489Acetylglutamate kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007275biological_processdevelopment
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55643.1.S1_at--772--1751Chr04:27321354..27321378 (25 bp)
ACCTGCTCCTGGACCTGAGATACGA
LOC_Os04g46440
Os.55643.1.S1_at--28--8911Chr04:27321369..27321393 (25 bp)
TGAGATACGAGACGTCCTCGAGCCT
LOC_Os04g46440
Os.55643.1.S1_at--687--3791Chr04:27321452..27321476 (25 bp)
CTCGAGGAGCCCATGCTGTGGGATT
LOC_Os04g46440
Os.55643.1.S1_at--286--791Chr04:27321485..27321509 (25 bp)
ATGTGGCTGCTCATGGGAGCCAGTC
LOC_Os04g46440
Os.55643.1.S1_at--1020--4411Chr04:27321503..27321527 (25 bp)
GCCAGTCATGCTTCCGTGTATTAGA
LOC_Os04g46440
Os.55643.1.S1_at--229--10051Chr04:27321524..27321548 (25 bp)
TAGATCGATCAGTGGCTTGTACATG
LOC_Os04g46440
Os.55643.1.S1_at--22--7031Chr04:27321542..27321566 (25 bp)
GTACATGGCGGTGCTTCTTTTCTTC
LOC_Os04g46440
Os.55643.1.S1_at--242--10571Chr04:27321567..27321591 (25 bp)
TTCTTTACTCTGCTTCTGCTCTGTT
LOC_Os04g46440
Os.55643.1.S1_at--65--10331Chr04:27321640..27321664 (25 bp)
TTTCTTCTTTTCTTTGCCAAATCTA
LOC_Os04g46440
Os.55643.1.S1_at--1--4411Chr04:27321655..27321679 (25 bp)
GCCAAATCTAGCATGCGAGGTTGTA
LOC_Os04g46440
Os.55643.1.S1_at--649--2711Chr04:27321741..27321765 (25 bp)
AAGCATCTTATCTTCGACTATCCCT
LOC_Os04g46440
Target Sequence 
ACCTGCTCCTGGACCTGAGATACGAGACGTCCTCGAGCCTCTCGTGCGGGGCGTCGTGGGCCGTCGATGACGACGTGGCC
GGCGGCGTCGTGTTCCGCCTCGAGGAGCCCATGCTGTGGGATTACTGATCAATGTGGCTGCTCATGGGAGCCAGTCATGC
TTCCGTGTATTAGATCGATCAGTGGCTTGTACATGGCGGTGCTTCTTTTCTTCTTCTTTACTCTGCTTCTGCTCTGTTCT
CTTTCTTCTTTTCTCCCTTTGTATTTTGTTTTTTTTCCTTCCATTTTTTCTTCTTTTCTTTGCCAAATCTAGCATGCGAG
GTTGTATAAAGTCAGTTCCTTTTCCTCGCCTTGCTTGATTTGGGGGACAAGAATATGTATAATTAACAAGCATCTTATCT
TCGACTATCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55643.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis