Browse Element(s) Details


Os.5565.1.S1_at

Description gb:AK111689.1
DB_XREF= gi:37988352
TID=Os.5565.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5565 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023003O14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003O14, full insert sequence.
FL= gb:AK111689.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1805011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18000NANA7+10650795..10653043Zinc knuckle family protein
LOC_Os07g18010NANA7+10655339..10655860retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18020NANA7+10661154..10662257hypothetical protein
LOC_Os07g18030NANA7+10670514..10672843hypothetical protein
LOC_Os07g18040OsAffx.28499.1.S1_at11/117+10676316..10676555hypothetical protein
LOC_Os07g18050Os.5565.1.S1_at11/117+10676958..10681396RNA recognition motif family protein, expressed
LOC_Os07g18060Os.35344.18.S1_x_at11/117+10682319..10688366transposon protein, putative, Mutator sub-class
LOC_Os07g18060Os.35344.3.S1_x_at9/117+10682319..10688366transposon protein, putative, Mutator sub-class
LOC_Os07g18060OsAffx.22940.5.S1_x_at3/117+10682319..10688366transposon protein, putative, Mutator sub-class
LOC_Os07g18070Os.50491.1.S1_at10/117+10691581..10692164expressed protein
LOC_Os07g18080NANA7+10694155..10697460transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18090Os.14491.2.S1_x_at3/117+10698912..10704024transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18090Os.47463.1.S1_x_at3/117+10698912..10704024transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5565.1.S1_at--348--3271Chr07:10677447..10677471 (25 bp)
CAAACCAGGTCCACAGCAGGCTGGG
LOC_Os07g18050
Os.5565.1.S1_at--338--3491Chr07:10677431..10677455 (25 bp)
CAGGCTGGGCAAGGTCAGGCATCAA
LOC_Os07g18050
Os.5565.1.S1_at--863--951Chr07:10677399..10677423 (25 bp)
AGGACAGAGTTATCCTGAGCCGCCA
LOC_Os07g18050
Os.5565.1.S1_at--874--2131Chr07:10677282..10677306 (25 bp)
ACAGTACCCAGCTTATCAACCTATG
LOC_Os07g18050
Os.5565.1.S1_at--1073--1551Chr07:10677273..10677297 (25 bp)
AGCTTATCAACCTATGCTGGCACCA
LOC_Os07g18050
Os.5565.1.S1_at--718--1511Chr07:10677199..10677223 (25 bp)
AGCAGCTGGGTCAAGGCCCTCAGCA
LOC_Os07g18050
Os.5565.1.S1_at--456--7831Chr07:10677191..10677215 (25 bp)
GGTCAAGGCCCTCAGCAACAGACAA
LOC_Os07g18050
Os.5565.1.S1_at--1147--9651Chr07:10677180..10677204 (25 bp)
TCAGCAACAGACAACCCAGAACGGA
LOC_Os07g18050
Os.5565.1.S1_at--999--3411Chr07:10677173..10677197 (25 bp)
CAGACAACCCAGAACGGAATGACTT
LOC_Os07g18050
Os.5565.1.S1_at--299--7411Chr07:10677058..10677082 (25 bp)
GTGATTAGCAGTAAAACTACCCAGT
LOC_Os07g18050
Os.5565.1.S1_at--794--2551Chr07:10676965..10676989 (25 bp)
AACTGGGAATTGGAACTTACTCATT
LOC_Os07g18050
Target Sequence 
CAAACCAGGTCCACAGCAGGCTGGGCAAGGTCAGGCATCAAGCAGCTCAGGACAGAGTTATCCTGAGCCGCCACCACCAT
ATTACCATGGTGGTCAGTATCCCCCCTACTATCCACCTTATGGCGGTTACATGCCCCCACCTCGCATGCCATACCAGCAG
CCACCACAGTACCCAGCTTATCAACCTATGCTGGCACCACCAGCACAGTCGCAAGCTAGCTCATNGCAACAACCAGCACC
GGCAACGCAGCAGCTGGGTCAAGGCCCTCAGCAACAGACAACCCAGAACGGAATGACTTAATCTTTTATTGGTAATGTTG
TATTCCTGGAATCTGTTCTGTGGGAGATTGTAACCCTTGTTGGTAACCGGTTTTTGTATGTTCTAATTTGTGATTAGCAG
TAAAACTACCCAGTATTGCTTATCTGAATCAAAANCTGAGGAACATGCTGGATCTTGTCCAGCCNTTAAATTTTGTTCCG
TTAACTGGGAATTGGAACTTACTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5565.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis