Browse Element(s) Details


Os.55650.1.A1_at

Description gb:AK108489.1
DB_XREF= gi:32993698
TID=Os.55650.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.55650 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-143-F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-F12, full insert sequence.
FL= gb:AK108489.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g185907/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g346507/11retrotransposon protein, putative, unclassified
LOC_Os02g444307/11transposon protein, putative, unclassified
LOC_Os02g491007/11retrotransposon protein, putative, unclassified
LOC_Os01g432106/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g104106/11transposon protein, putative, unclassified
LOC_Os04g215104/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g304403/11hypothetical protein
LOC_Os01g314001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g134101/11Zinc knuckle family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18550Os.2249.1.S1_at11/112+10822641..1082567040S ribosomal protein S3a, putative, expressed
LOC_Os02g18560NANA2+10827394..10831164retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18570Os.46862.1.S1_at5/112+10831878..10833756retrotransposon protein, putative, unclassified
LOC_Os02g18580OsAffx.30582.1.S1_s_at10/112+10836766..10837275hypothetical protein
LOC_Os02g18590Os.55650.1.A1_at7/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18590OsAffx.22385.1.S1_x_at7/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18590OsAffx.21756.5.A1_x_at5/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18590Os.52979.1.S1_at4/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18590OsAffx.20329.1.S1_at2/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18590Os.22646.1.S1_x_at1/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18590OsAffx.22143.1.S1_at1/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18600OsAffx.11549.1.S1_at1/112+10846039..10848189transposon protein, putative, unclassified
LOC_Os02g18600OsAffx.31811.4.S1_at1/112+10846039..10848189transposon protein, putative, unclassified
LOC_Os02g18610OsAffx.12103.1.S1_at11/112+10849474..10850435hypothetical protein
LOC_Os02g18610OsAffx.26471.1.S1_at1/112+10849474..10850435hypothetical protein
LOC_Os02g18620OsAffx.24310.1.S1_at11/112+10854612..10855586hypothetical protein
LOC_Os02g18630Os.54656.1.S1_at11/112+10857584..10859010F-box domain containing protein, expressed
LOC_Os02g18640Os.56259.1.S1_at11/112+10861340..10862860F-box domain containing protein, expressed
LOC_Os02g18650Os.54891.1.S1_at11/112+10864067..10867220Pectinesterase-2 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55650.1.A1_at--1107--58157Chr12:4783828..4783895 (25 bp)
GACCGACCAGGTTGAGTGGGCTCAA
NONE
Os.55650.1.A1_at--495--7110Chr09:22892581..22892601 (21 bp)
ATGATTGCCCTGTAACGGCTAGCTT
NONE
Os.55650.1.A1_at--651--9374Chr03:9468..9492 (25 bp)
TCGGTTCCAACGACTAGTTTTGGTG
NONE
Os.55650.1.A1_at--285--76953Chr12:1384200..1384224 (25 bp)
GGGTAAGGTTTTGGCACTCCATTGC
NONE
Os.55650.1.A1_at--1005--37973Chr12:4784071..4784095 (25 bp)
CTCCATTGCATTATCTTGAACCCTT
NONE
Os.55650.1.A1_at--492--107563Chr12:4784086..4784110 (25 bp)
TTGAACCCTTGCAAGAGCTCTCACA
NONE
Os.55650.1.A1_at--1071--3351Chr04:26955256..26955280 (25 bp)
CACCCTTGTGCACTTTGTTTATCTA
NONE
Os.55650.1.A1_at--987--88970Chr12:13640729..13640753 (25 bp)
TGAGTTAAGCCAATCCAAGTGCATT
NONE
Os.55650.1.A1_at--966--28549Chr10:7703727..7703751 (25 bp)
AAGTGCATTGCTTCATTGTTATAGC
NONE
Os.55650.1.A1_at--763--27174Chr12:13640796..13640820 (25 bp)
AAGCATCCTAGACTTGTTACTCTTG
NONE
Os.55650.1.A1_at--105--4931Chr04:26955102..26955126 (25 bp)
GCTTGTATAGGTGTTGCTCGGTGAC
NONE
Target Sequence 
GACCGACCAGGTTGAGTGGGCTCAATGATTGCCCTGTAACGGCTAGCTTTCTAGCCGTTACAAAGTAGTCCGGTCTGACC
GGCCTCACAACGGCGGTNTGACCGGCAGGGCACAGAGTTGGGGATTTCGGTTCCAACGACTAGTTTTGGTGGTTGGGGGT
ATATATACCCACTCCCCAGCAGCAAGGGTAAGGTTTTGGCACTCCATTGCATTATCTTGAACCCTTGCAAGAGCTCTCAC
ACCCTTGTGCACTTTGTTTATCTAGTGAGGTGTTAGAGAGTGAGTTAAGCCAATCCAAGTGCATTGCTTCATTGTTATAG
CTAGTGTGACACTTGATCATCCTCGGCAAGCATCCTAGACTTGTTACTCTTGGAGGTTGCCGCCTCCTAGACGGCTTGTA
TAGGTGTTGCTCGGTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55650.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis