Browse Element(s) Details


Os.55663.1.S1_at

Description gb:AK108517.1
DB_XREF= gi:32993726
TID=Os.55663.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55663 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-144-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-144-A11, full insert sequence.
FL= gb:AK108517.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3582011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35780NANA2+21497115..21499620transposon protein, putative, Mutator sub-class
LOC_Os02g35790OsAffx.24589.1.S1_at11/112+21501175..21501640hypothetical protein
LOC_Os02g35800NANA2+21502794..21505423retrotransposon protein, putative, unclassified
LOC_Os02g35810OsAffx.24590.1.S1_at11/112+21507163..21507769hypothetical protein
LOC_Os02g35820Os.52284.1.S1_at11/112+21512898..21517682retrotransposon protein, putative, unclassified, expressed
LOC_Os02g35820Os.55663.1.S1_at11/112+21512898..21517682retrotransposon protein, putative, unclassified, expressed
LOC_Os02g35820Os.52284.2.S1_x_at11/112+21512898..21517682retrotransposon protein, putative, unclassified, expressed
LOC_Os02g35830Os.16973.1.S1_at11/112+21520020..21523069expressed protein
LOC_Os02g35840Os.7921.1.S1_at11/112+21523733..21526921expressed protein
LOC_Os02g35849OsAffx.13875.1.S1_at2/112+21530597..21532263NA
LOC_Os02g35860Os.17728.1.S1_at10/112+21537741..21542976expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55663.1.S1_at--878--31Chr02:21513424..21513448 (25 bp)
ATTCTACGAGTTCGAACCCGAGCTG
LOC_Os02g35820
Os.55663.1.S1_at--705--5892Chr08:23594196..23594220 (25 bp)
GAGCTGAGCTAGTAACCCCATCAAA
NONE
Os.55663.1.S1_at--182--4851Chr02:21513468..21513492 (25 bp)
GCTACAGTAGCAACTATCTGCTGGT
LOC_Os02g35820
Os.55663.1.S1_at--584--5592Chr08:23594252..23594399 (25 bp)
GAAATTGCAGACTTGCCTGCAGCTT
NONE
Os.55663.1.S1_at--642--3931Chr02:21513530..21513554 (25 bp)
CGGCGTCACTGTTGGCTTGCAGCTG
LOC_Os02g35820
Os.55663.1.S1_at--878--4431Chr02:21513607..21513631 (25 bp)
GCCATCTACTGTGCGTGTCACGACA
LOC_Os02g35820
Os.55663.1.S1_at--704--2091Chr02:21513629..21513653 (25 bp)
ACATCGGCTCGGAACACAAGTCAAC
LOC_Os02g35820
Os.55663.1.S1_at--167--9691Chr02:21513649..21513673 (25 bp)
TCAACCCAAAAGATCGGACCGACCA
LOC_Os02g35820
Os.55663.1.S1_at--157--5831Chr02:21513665..21513689 (25 bp)
GACCGACCATGTACCCACAGAGTGT
LOC_Os02g35820
Os.55663.1.S1_at--261--2131Chr02:21513681..21513705 (25 bp)
ACAGAGTGTGTGGACCCGGTAGTCA
LOC_Os02g35820
Os.55663.1.S1_at--1157--1331Chr02:21513727..21513751 (25 bp)
AGAGAGACCTTGAGCACATTGCTAT
LOC_Os02g35820
Target Sequence 
ATTCTACGAGTTCGAACCCGAGCTGAGCTAGTAACCCCATCAAAGCTACAGTAGCAACTATCTGCTGGTGATAATGAAAT
TGCAGACTTGCCTGCAGCTTGCTTGCCGGCGTCACTGTTGGCTTGCAGCTGGCCCGCTGCTGTCTGCCGCCTCCCGTGCA
CGCCCGCGCAGTGTCACGCCATCGCCATCTACTGTGCGTGTCACGACATCGGCTCGGAACACAAGTCAACCCAAAAGATC
GGACCGACCATGTACCCACAGAGTGTGTGGACCCGGTAGTCAGAGACCGGGCCACGGTAAGAGAGAGAGACCTTGAGCAC
ATTGCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55663.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis