Browse Element(s) Details


Os.55702.1.S1_at

Description gb:AK108604.1
DB_XREF= gi:32993813
TID=Os.55702.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55702 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-146-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-G01, full insert sequence.
FL= gb:AK108604.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5540011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55360Os.23915.1.S1_at11/113+31434870..31439304DnaJ domain containing protein, expressed
LOC_Os03g55370OsAffx.13493.1.S1_at11/113+31440423..31441343hypothetical protein
LOC_Os03g55370OsAffx.24548.1.S1_x_at1/113+31440423..31441343hypothetical protein
LOC_Os03g55380Os.55956.1.S1_at11/113+31442709..31446679prolyl 4-hydroxylase, putative, expressed
LOC_Os03g55389Os.1175.1.S1_at10/113+31447755..31453402Casein kinase II, alpha chain 1, putative, expressed
LOC_Os03g55389Os.28405.1.S1_x_at5/113+31447755..31453402Casein kinase II, alpha chain 1, putative, expressed
LOC_Os03g55400Os.55702.1.S1_at11/113+31456300..31457825expressed protein
LOC_Os03g55410Os.32471.1.S1_at11/113+31465668..31467190Peroxidase 51 precursor, putative, expressed
LOC_Os03g55420Os.11548.1.S1_at11/113+31469757..31472467Peroxidase 35 precursor, putative, expressed
LOC_Os03g55430Os.10390.1.S1_at11/113+31476797..31477784expressed protein
LOC_Os03g55440OsAffx.25719.1.S1_at11/113+31478415..31480076hypothetical protein
LOC_Os03g55450Os.17749.1.A1_at11/113+31481890..31483415expressed protein
LOC_Os03g55450Os.17749.2.S1_at10/113+31481890..31483415expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55702.1.S1_at--956--6971Chr03:31456606..31456630 (25 bp)
GTACCACCACAAGCGGAGGCCGGGT
LOC_Os03g55400
Os.55702.1.S1_at--341--1951Chr03:31456502..31456526 (25 bp)
ACTGGCTCAGCCTTCGGATGGCGTG
LOC_Os03g55400
Os.55702.1.S1_at--900--1831Chr03:31456446..31456470 (25 bp)
ACGCGTGCATGCATGTACTGTCTCA
LOC_Os03g55400
Os.55702.1.S1_at--403--751Chr03:31456434..31456458 (25 bp)
ATGTACTGTCTCATGGCCGGCCGGG
LOC_Os03g55400
Os.55702.1.S1_at--1153--5011Chr03:31456406..31456430 (25 bp)
GCAGTGTCAGCCAGCACGCAGCTGA
LOC_Os03g55400
Os.55702.1.S1_at--557--5071Chr03:31456389..31456413 (25 bp)
GCAGCTGACTTCTTGTCGTCGTTGA
LOC_Os03g55400
Os.55702.1.S1_at--332--9591Chr03:31456379..31456403 (25 bp)
TCTTGTCGTCGTTGAGTTGTACTCC
LOC_Os03g55400
Os.55702.1.S1_at--1128--10751Chr03:31456368..31456392 (25 bp)
TTGAGTTGTACTCCACCATGCTTCT
LOC_Os03g55400
Os.55702.1.S1_at--936--4351Chr03:31456356..31456380 (25 bp)
CCACCATGCTTCTTTGCTTTGCTTC
LOC_Os03g55400
Os.55702.1.S1_at--30--10271Chr03:31456339..31456363 (25 bp)
TTTGCTTCCCGCTTGGTTAATGGAT
LOC_Os03g55400
Os.55702.1.S1_at--384--4211Chr03:31456331..31456355 (25 bp)
CCGCTTGGTTAATGGATCAACTCTA
LOC_Os03g55400
Target Sequence 
GTACCACCACAAGCGGAGGCCGGGTCCGGCGGCGGCGTTCGACGTGGTGCAGGTGGACGACGGCGCCGTGCAGGCGGCGC
CGCCGCCGCCGCCGCTGCTGTTCCACTGGCTCAGCCTTCGGATGGCGTGAGAGAGAGAGAGAGAGGAAGGAGAAGCACGG
ACGCGTGCATGCATGTACTGTCTCATGGCCGGCCGGGCGGGCAGTGTCAGCCAGCACGCAGCTGACTTCTTGTCGTCGTT
GAGTTGTACTCCACCATGCTTCTTTGCTTTGCTTCCCGCTTGGTTAATGGATCAACTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55702.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis