Browse Element(s) Details

Os.55706.1.S1_at

Description

gb:AK108615.1
DB_XREF= gi:32993824
TID=Os.55706.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55706 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-147-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-B05, full insert sequence.
FL= gb:AK108615.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os09g15560	11/11	F-box domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os09g15490	NA	NA	9	+	9482798..9483515	hypothetical protein
LOC_Os09g15500	OsAffx.29854.1.S1_x_at	7/11	9	+	9485054..9486123	Peroxidase family protein
LOC_Os09g15500	OsAffx.29854.1.S1_at	6/11	9	+	9485054..9486123	Peroxidase family protein
LOC_Os09g15500	Os.28000.1.A1_x_at	4/11	9	+	9485054..9486123	Peroxidase family protein
LOC_Os09g15510	OsAffx.29854.1.S1_x_at	11/11	9	+	9489520..9491543	Peroxidase family protein, expressed
LOC_Os09g15510	OsAffx.29854.1.S1_at	11/11	9	+	9489520..9491543	Peroxidase family protein, expressed
LOC_Os09g15510	Os.28000.1.A1_x_at	4/11	9	+	9489520..9491543	Peroxidase family protein, expressed
LOC_Os09g15520	Os.6617.1.S1_s_at	11/11	9	+	9495345..9496052	Oleosin family protein, expressed
LOC_Os09g15530	OsAffx.29855.1.S1_at	11/11	9	+	9496190..9497538	hypothetical protein
LOC_Os09g15540	Os.56211.1.S1_at	11/11	9	+	9497903..9499492	F-box domain containing protein, expressed
LOC_Os09g15540	OsAffx.9167.1.S1_x_at	1/11	9	+	9497903..9499492	F-box domain containing protein, expressed
LOC_Os09g15550	Os.56250.1.S1_at	11/11	9	+	9500360..9501868	F-box domain containing protein, expressed
LOC_Os09g15560	Os.55706.1.S1_at	11/11	9	+	9504693..9506076	F-box domain containing protein, expressed
LOC_Os09g15570	OsAffx.29856.1.S1_at	11/11	9	+	9510313..9512124	F-box domain containing protein, expressed
LOC_Os09g15580	OsAffx.30126.2.S1_at	11/11	9	+	9513235..9516346	hypothetical protein
LOC_Os09g15580	OsAffx.30126.2.S1_x_at	10/11	9	+	9513235..9516346	hypothetical protein
LOC_Os09g15580	Os.16896.1.S1_at	5/11	9	+	9513235..9516346	hypothetical protein
LOC_Os09g15580	Os.36979.1.S1_x_at	3/11	9	+	9513235..9516346	hypothetical protein
LOC_Os09g15590	OsAffx.30125.1.S1_at	11/11	9	+	9517483..9523582	F-box domain containing protein, expressed
LOC_Os09g15590	OsAffx.8513.1.S1_s_at	1/11	9	+	9517483..9523582	F-box domain containing protein, expressed
LOC_Os09g15600	OsAffx.13016.2.S1_at	10/11	9	+	9525904..9527944	transposon protein, putative, unclassified
LOC_Os09g15610	Os.14491.2.S1_x_at	4/11	9	+	9529692..9532617	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g15610	Os.47463.1.S1_x_at	4/11	9	+	9529692..9532617	transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.55706.1.S1_at--1037--303	1	Chr09:9505509..9505533 (25 bp)	AATCGACAACGAAGACGGCGCCACG	LOC_Os09g15560
Os.55706.1.S1_at--977--315	1	Chr09:9505559..9505583 (25 bp)	AATTCGCCATCACGATGTTCCCGGA	LOC_Os09g15560
Os.55706.1.S1_at--93--719	1	Chr09:9505588..9505612 (25 bp)	GTCTGGGCGCCCTATGACAAGTACA	LOC_Os09g15560
Os.55706.1.S1_at--164--897	1	Chr09:9505602..9505626 (25 bp)	TGACAAGTACACCTTCCGTGTCATC	LOC_Os09g15560
Os.55706.1.S1_at--116--949	1	Chr09:9505647..9505671 (25 bp)	TCTGCGTGTCGTCCGCGTGATAAAC	LOC_Os09g15560
Os.55706.1.S1_at--710--641	1	Chr09:9505675..9505699 (25 bp)	GATCTCAAGGTCTTCACGCAGCTCG	LOC_Os09g15560
Os.55706.1.S1_at--1098--461	1	Chr09:9505769..9505793 (25 bp)	GCGAGGAGGGACTCTTCTTCCAGCA	LOC_Os09g15560
Os.55706.1.S1_at--234--347	1	Chr09:9505908..9505932 (25 bp)	CAGGAATTGGTATCCCGGGCCGGCT	LOC_Os09g15560
Os.55706.1.S1_at--347--965	1	Chr09:9505935..9505959 (25 bp)	TCAGTACGAGTCGTTGCCATGGCCA	LOC_Os09g15560
Os.55706.1.S1_at--139--181	1	Chr09:9505959..9505983 (25 bp)	ACCCGCATTGCAGGTTTGCACTGAT	LOC_Os09g15560
Os.55706.1.S1_at--112--977	1	Chr09:9506045..9506069 (25 bp)	TAATGGTCAGTCACCGTGCAAATTA	LOC_Os09g15560

Target Sequence

AATCGACAACGAAGACGGCGCCACGCTCGTCCTCGACGAGAGCACCACCGAATTCGCCATCACGATGTTCCCGGAGAACG
TCTGGGCGCCCTATGACAAGTACACCTTCCGTGTCATCGGCGACGGCGACGACGGTGCTCTGCGTGTCGTCCGCGTGATA
AACAACGATCTCAAGGTCTTCACGCAGCTCGCCGGCGGCGGCGAGTGGGTGCTGGAGAAGACGGTGAGCTTGCCGGAGGC
GACACGTGGGCTGCCGGGGCGCGAGGAGGGACTCTTCTTCCAGCACGGCGAGGCGATGATCGTCGCGGCGAGCGCGGCGT
ACGTCCTCGTGACGCCGCGGGAGAAGGCGTGGATGTTCTCCGTCGAGCTGGACACGATGGAGGTGGAACGCGAGCACGAC
AGGAATTGGTATCCCGGGCCGGCTTATCAGTACGAGTCGTTGCCATGGCCACCCGCATTGCAGGTTTGCACTGATGGATA
ATAAACATGTTGTAATTATCAGATTATTCTGCTCGAGAAATCAATCAAGCTATATATAATGGTCAGTCACCGTGCAAATT
A

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis