Browse Element(s) Details


Os.55708.1.A1_at

Description gb:AK108621.1
DB_XREF= gi:32993830
TID=Os.55708.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55708 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-147-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-D04, full insert sequence.
FL= gb:AK108621.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4287011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42850Os.9971.1.S1_s_at11/112+25753984..25757154Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g42860Os.14249.1.S1_a_at11/112+25761430..25768571ATP-dependent RNA helicase ste13, putative, expressed
LOC_Os02g42870Os.55708.1.A1_at11/112+25772210..25774926Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g42880Os.54449.1.S1_at11/112+25783370..25785344Remorin, C-terminal region family protein, expressed
LOC_Os02g42890OsAffx.24693.1.S1_at11/112+25791428..25794151Cytochrome b561 family protein, expressed
LOC_Os02g42890Os.51361.1.S1_at10/112+25791428..25794151Cytochrome b561 family protein, expressed
LOC_Os02g42900OsAffx.2945.1.S1_at11/112+25797244..25797987hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55708.1.A1_at--21--4351Chr02:25774411..25774435 (25 bp)
CCATGGCGGTGGACGAGTACCAGAT
LOC_Os02g42870
Os.55708.1.A1_at--1061--4151Chr02:25774504..25774528 (25 bp)
CGCCGGTCGACTTGCTCGAGGCGTC
LOC_Os02g42870
Os.55708.1.A1_at--1129--5051Chr02:25774622..25774646 (25 bp)
GCAGCATCATGCCTCGACGTAGGAG
LOC_Os02g42870
Os.55708.1.A1_at--509--3531Chr02:25774629..25774653 (25 bp)
CATGCCTCGACGTAGGAGTATGTAT
LOC_Os02g42870
Os.55708.1.A1_at--117--5111Chr02:25774699..25774723 (25 bp)
GAAGGGTAGGACACACGTACGAGAC
LOC_Os02g42870
Os.55708.1.A1_at--540--7731Chr02:25774803..25774827 (25 bp)
GGTGTGTATTAGTATTACGGCCTTT
LOC_Os02g42870
Os.55708.1.A1_at--462--9931Chr02:25774818..25774842 (25 bp)
TACGGCCTTTTGGATGGCATTCTCT
LOC_Os02g42870
Os.55708.1.A1_at--4--7591Chr02:25774853..25774877 (25 bp)
GGGCTTACCGGAGATGCTCTAATAC
LOC_Os02g42870
Os.55708.1.A1_at--552--8051Chr02:25774862..25774886 (25 bp)
GGAGATGCTCTAATACATTCAATGA
LOC_Os02g42870
Os.55708.1.A1_at--575--3591Chr02:25774877..25774901 (25 bp)
CATTCAATGATGTTCGATCTTTCAG
LOC_Os02g42870
Os.55708.1.A1_at--892--731Chr02:25774886..25774910 (25 bp)
ATGTTCGATCTTTCAGTGTTGGATA
LOC_Os02g42870
Target Sequence 
CCATGGCGGTGGACGAGTACCAGATGTTCCTCGACTTCGCCGGCGAGGAGCTGGGCCTGTTCCACGGCCGGTACGGCGGC
TTCTCGCTCTTCCCGCCGGTCGACTTGCTCGAGGCGTCNCTGNAGACGNCGTTCAAGTGACCCGTACGTCNACGACGACC
TTGCTCGCCGCNCGCCATGTACNGACGTACTACGTACTCCGCAGCCGCAGCAGCAGCATCATGCCTCGACGTAGGAGTAT
GTATATAAGCAAGTGTTCTGGGGCGTCCGGACAGTAGGCGCGTCCGTGTGAAGGGTAGGACACACGTACGAGACGTGGGA
NAAAATTTTGGGGATCAATTAGGGTTCTAAGGATAATCTGTAGCTTGGGGTTTAGGCATGGGGGGAACATCATGGTGTGT
ATTAGTATTACGGCCTTTTGGATGGCATTCTCTGGGGGGCAAGGGGCTTACCGGAGATGCTCTAATACATTCAATGATGT
TCGATCTTTCAGTGTTGGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55708.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis