Browse Element(s) Details


Os.55746.1.S1_at

Description gb:AK108710.1
DB_XREF= gi:32993919
TID=Os.55746.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55746 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-150-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-150-A11, full insert sequence.
FL= gb:AK108710.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2853010/11Terpene synthase family, metal binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28500OsAffx.7236.1.S1_at11/1111+15908651..15910852Terpene synthase, N-terminal domain containing protein
LOC_Os11g28510OsAffx.31187.1.S1_at11/1111+15916227..15916718hypothetical protein
LOC_Os11g28520OsAffx.19056.1.S1_at11/1111+15922706..15923347hypothetical protein
LOC_Os11g28530OsAffx.31188.1.S1_x_at11/1111+15933332..15940606Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os11g28530Os.55746.1.S1_at10/1111+15933332..15940606Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os11g28540OsAffx.19057.1.S1_at10/1111+15952822..15954879expressed protein
LOC_Os11g28540OsAffx.31133.2.S1_at1/1111+15952822..15954879expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009686biological_processgibberellic acid biosynthesis
GO:0009740biological_processgibberellic acid mediated signaling
GO:0016099biological_processmonoterpenoid biosynthesis
GO:0009507cellular_componentchloroplast
GO:0009536cellular_componentplastid
GO:0009899molecular_functionent-kaurene synthase activity
GO:0009905molecular_functionent-copalyl diphosphate synthase activity
GO:0042408molecular_functionmyrcene/(E)-beta-ocimene synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55746.1.S1_at--944--3351Chr11:15933549..15933573 (25 bp)
CACCTGCAAGAGTAACACCTGAATT
LOC_Os11g28530
Os.55746.1.S1_at--687--5211Chr11:15933529..15933553 (25 bp)
GAATTAATTCCTACGTCTTGTTGCT
LOC_Os11g28530
Os.55746.1.S1_at--416--9251Chr11:15933521..15933545 (25 bp)
TCCTACGTCTTGTTGCTTGGCAAAT
LOC_Os11g28530
Os.55746.1.S1_at--593--6671Chr11:15933510..15933534 (25 bp)
GTTGCTTGGCAAATGACACATGATG
LOC_Os11g28530
Os.55746.1.S1_at--246--2111Chr11:15933493..15933517 (25 bp)
ACATGATGCAAATGGCCACTCTCCC
LOC_Os11g28530
Os.55746.1.S1_at--118--9511Chr11:15933474..15933498 (25 bp)
TCTCCCTCGCTGAACATTTTCTAAA
LOC_Os11g28530
Os.55746.1.S1_at--269--611Chr11:15933427..15933451 (25 bp)
ATGCGCGGGCATTTGATTTATTCTT
LOC_Os11g28530
Os.55746.1.S1_at--144--4671Chr11:15933423..15933447 (25 bp)
GCGGGCATTTGATTTATTCTTTTAC
LOC_Os11g28530
Os.55746.1.S1_at--521--10192Chr11:16334627..16334651 (25 bp)
TATTTAAATGATAAGGAGGCCTCCT
NONE
Os.55746.1.S1_at--724--7992Chr11:16334613..16334637 (25 bp)
GGAGGCCTCCTAGATTAAATAAAAT
NONE
Os.55746.1.S1_at--453--10472Chr11:16334599..16334623 (25 bp)
TTAAATAAAATCATTTGCCCCGACT
NONE
Target Sequence 
CACCTGCAAGAGTAACACCTGAATTAATTCCTACGTCTTGTTGCTTGGCAAATGACACATGATGCAAATGGCCACTCTCC
CTCGCTGAACATTTTCTAAAACTAGGAAGAAAACCCGCGCATATGCGCGGGCATTTGATTTATTCTTTTACGAAAATAAT
GCTTACAGAAGTCATATATCATTTTAATATATTTAAATGATAAGGAGGCCTCCTAGATTAAATAAAATCATTTGCCCCGA
CT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55746.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis