Browse Element(s) Details


Os.55755.1.S1_at

Description gb:AK108742.1
DB_XREF= gi:32993951
TID=Os.55755.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55755 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-150-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-150-E06, full insert sequence.
FL= gb:AK108742.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g252604/11HIT zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25200Os.47463.1.S1_x_at6/113+14380775..14384471transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g25200Os.14491.2.S1_x_at4/113+14380775..14384471transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g25210NANA3+14387557..14390889transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g25220OsAffx.25221.2.S1_s_at11/113+14392390..14393712F-box domain containing protein
LOC_Os03g25240OsAffx.25221.2.S1_s_at11/113+14397827..14399166F-box domain containing protein
LOC_Os03g25250OsAffx.13020.1.S1_at11/113+14401786..14403135hypothetical protein
LOC_Os03g25260OsAffx.13021.1.S1_s_at11/113+14403480..14406488HIT zinc finger family protein, expressed
LOC_Os03g25260Os.55755.1.S1_at4/113+14403480..14406488HIT zinc finger family protein, expressed
LOC_Os03g25260OsAffx.13021.1.S1_at1/113+14403480..14406488HIT zinc finger family protein, expressed
LOC_Os03g25270Os.2952.2.S1_at11/113+14410433..14414216pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os03g25270Os.2952.1.S1_x_at11/113+14410433..14414216pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os03g25270OsAffx.30040.1.S1_at1/113+14410433..14414216pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os03g25280Os.2965.1.S1_at11/113+14414919..14416258Peroxidase family protein, expressed
LOC_Os03g25280Os.19737.1.S1_at1/113+14414919..14416258Peroxidase family protein, expressed
LOC_Os03g25289NANA3+14417534..14418374auxin induced protein, putative
LOC_Os03g25300Os.19737.1.S1_at11/113+14424307..14425682Peroxidase family protein, expressed
LOC_Os03g25304NANA3+14425940..14426473Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g25310NANA3+14427400..14428222hypothetical protein
LOC_Os03g25314OsAffx.13024.1.S1_at11/113+14429059..14429430hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55755.1.S1_at--642--6191NONE
GAGGAAGACCATGTTCTCATGCAGA
NONE
Os.55755.1.S1_at--397--5371NONE
GAAGACCATGTTCTCATGCAGAGGA
NONE
Os.55755.1.S1_at--984--10471Chr03:14406134..14406300 (25 bp)
TTACAGGAGGCAAACCTGGAGTCGC
LOC_Os03g25260
Os.55755.1.S1_at--177--4131Chr03:14406438..14406462 (25 bp)
CGCTGCCAGGTCATTCACAACGATA
LOC_Os03g25260
Os.55755.1.S1_at--412--1031Chr03:14406445..14406469 (25 bp)
AGGTCATTCACAACGATACCCGCTG
LOC_Os03g25260
Os.55755.1.S1_at--169--6471Chr03:14406459..14406483 (25 bp)
GATACCCGCTGCCTGAAATTCGTGG
LOC_Os03g25260
Os.55755.1.S1_at--901--5591Chr03:14406473..14406497 (25 bp)
GAAATTCGTGGCCTGATCGATCTGC
NONE
Os.55755.1.S1_at--185--8471Chr03:14406481..14406501 (21 bp)
TGGCCTGATCGATCTGCTTGCTGTA
NONE
Os.55755.1.S1_at--845--6391Chr03:14406487..14406629 (25 bp)
GATCGATCTGCTTGCTGTACATATA
NONE
Os.55755.1.S1_at--929--471Chr03:14406613..14406634 (22 bp)
ATCTGCTTGCTGTACATATATCGTG
NONE
Os.55755.1.S1_at--487--231Chr03:14406627..14406651 (25 bp)
ATATCGTGTAGGAGGAATGGGAAAC
NONE
Target Sequence 
GAGGAAGACCATGTTCTCATGCAGAGGAAGCAGTCAAAGAATATGAAGCGCAAGACGAGGCAAGGGAAGGCATTGGAGAA
GAAGGCGGCGAGATCTTTCATGGACGTGTTACAGGAGGCAAACCTGGAGTCGCTGCCTCCCCATGTCCCAACGTACTCCA
GGGCCGCCGTTGGTCCCCCGAGCACCTCGTCCCGGCGCCATTACTGCTCGGTCTGCGGCAGCACGGCGAACTACACGTGC
GTCAGGTGCGGGACGAGGTTCTGCTCGTGCCGCTGCCAGGTCATTCACAACGATACCCGCTGCCTGAAATTCGTGGCCTG
ATCGATCTGCTTGCTGTACATATATCGTGTAGGAGGAATGGGAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55755.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis