Browse Element(s) Details


Os.55804.1.S1_at

Description gb:AK108827.1
DB_XREF= gi:32994036
TID=Os.55804.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55804 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-151-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-151-F11, full insert sequence.
FL= gb:AK108827.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4355011/11cyclin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43500Os.14058.1.S1_at11/112+26242755..26246139chaperone protein dnaJ, putative, expressed
LOC_Os02g43510OsAffx.12477.1.A1_at2/112+26247149..26247875hypothetical protein
LOC_Os02g43519Os.37365.1.S1_at11/112+26256778..26259797expressed protein
LOC_Os02g43519Os.37365.1.S2_at11/112+26256778..26259797expressed protein
LOC_Os02g43519Os.37365.1.S3_at11/112+26256778..26259797expressed protein
LOC_Os02g43530OsAffx.24702.1.S1_at11/112+26261565..26261858hypothetical protein
LOC_Os02g43540Os.1327.1.S1_at11/112+26265812..26266785expressed protein
LOC_Os02g43540OsAffx.24703.1.S1_s_at11/112+26265812..26266785expressed protein
LOC_Os02g43550Os.55804.1.S1_at11/112+26269531..26271815cyclin family protein, putative, expressed
LOC_Os02g43560OsAffx.24704.1.S1_s_at11/112+26274418..26278019WRKY family transcription factor, putative, expressed
LOC_Os02g43560Os.53486.1.S1_at10/112+26274418..26278019WRKY family transcription factor, putative, expressed
LOC_Os02g43570OsAffx.24705.1.S1_at11/112+26284282..26284741hypothetical protein
LOC_Os02g43580OsAffx.24706.1.S1_at11/112+26287318..26287560hypothetical protein
LOC_Os02g43590Os.5489.1.S1_at11/112+26291016..26295465phagocytosis and cell motility protein ELMO1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0004693molecular_functioncyclin-dependent protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55804.1.S1_at--463--4811Chr02:26271360..26271384 (25 bp)
GCTCTCCGCAGTCAAGTTCATGGAT
LOC_Os02g43550
Os.55804.1.S1_at--656--391Chr02:26270002..26270026 (25 bp)
ATCAGCCTGGCGGAGATGAACTACC
LOC_Os02g43550
Os.55804.1.S1_at--808--7651Chr02:26269953..26269977 (25 bp)
TAGGGTTCGACCTGAACGTGACGCC
LOC_Os02g43550
Os.55804.1.S1_at--3--2031Chr02:26269857..26269881 (25 bp)
ACTACTGCTGCCTGTCCGAGGACGA
LOC_Os02g43550
Os.55804.1.S1_at--1025--3791Chr02:26269811..26269835 (25 bp)
CTCGCTGCGTGAAGCGGCCATGGAA
LOC_Os02g43550
Os.55804.1.S1_at--173--4871Chr02:26269782..26269806 (25 bp)
GCTAGCATGTCACACTGCGTACATA
LOC_Os02g43550
Os.55804.1.S1_at--922--331Chr02:26269760..26269784 (25 bp)
ATACATGTGATCTGTCCTACGTGCT
LOC_Os02g43550
Os.55804.1.S1_at--971--6531Chr02:26269706..26269730 (25 bp)
GATTAGTTTAGTTAGCCTGCTAGCT
LOC_Os02g43550
Os.55804.1.S1_at--937--1551Chr02:26269676..26269700 (25 bp)
AGCTAATAGGTGGTCGATCGCCCTC
LOC_Os02g43550
Os.55804.1.S1_at--368--9271Chr02:26269651..26269675 (25 bp)
TCCTCCTGCATGATGCGTACAGCAG
LOC_Os02g43550
Os.55804.1.S1_at--470--9131Chr02:26269618..26269642 (25 bp)
TGCTGTGCACTCCTTTGTTCTTTTT
LOC_Os02g43550
Target Sequence 
GCTCTCCGCAGTCAAGTTCATGGATGACATATGCTACAACAACGCCTACTTCGCCAAGGTCGGGGGCATCAGCCTGGCGG
AGATGAACTACCTCGAGGTGGACTTCCTGTTCGGCGTAGGGTTCGACCTGAACGTGACGCCGGAGACGTTCGCCGACTAC
TGCGCCGTGCTCCAGTCCGAGATGCTCTGCGCGGCGCCCCCGACGAGGCTGCACTACTGCTGCCTGTCCGAGGACGATGC
CGGCAGCAGCAGCAGCAGCTCGCTGCGTGAAGCGGCCATGGAAGCAAGCTAGCATGTCACACTGCGTACATACATGTGAT
CTGTCCTACGTGCTGGAGTATTAGTTAGTGTGGCAGTTGCTTTGATTAGTTTAGTTAGCCTGCTAGCTATAGTAGCTAAT
AGGTGGTCGATCGCCCTCTCCTCCTGCATGATGCGTACAGCAGTGCATTCTTGCTGTGCACTCCTTTGTTCTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55804.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis