Browse Element(s) Details


Os.55823.1.S1_at

Description gb:AK108851.1
DB_XREF= gi:32994060
TID=Os.55823.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55823 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-152-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-152-A08, full insert sequence.
FL= gb:AK108851.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2449011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g24460OsAffx.7686.1.S1_at11/1112+13964813..13965765hypothetical protein
LOC_Os12g24480OsAffx.19802.1.S1_at11/1112+13974921..13977301hypothetical protein
LOC_Os12g24480OsAffx.13388.1.S1_at1/1112+13974921..13977301hypothetical protein
LOC_Os12g24490Os.55823.1.S1_at11/1112+13979331..13980242Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g24500OsAffx.19803.1.S1_at11/1112+13983746..13988422expressed protein
LOC_Os12g24500Os.32374.2.S1_x_at1/1112+13983746..13988422expressed protein
LOC_Os12g24500Os.32374.3.S1_x_at1/1112+13983746..13988422expressed protein
LOC_Os12g24510NANA12+13988934..13992563retrotransposon protein, putative, unclassified
LOC_Os12g24519OsAffx.28472.1.A1_x_at10/1112+13995152..13996126hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0010200biological_processresponse to chitin
GO:0050832biological_processdefense response to fungi
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55823.1.S1_at--261--4671Chr12:13979680..13979704 (25 bp)
GCGGGCTGGTTCACCTGGTACTACT
LOC_Os12g24490
Os.55823.1.S1_at--958--8571Chr12:13979686..13979710 (25 bp)
TGGTTCACCTGGTACTACTTCGGCG
LOC_Os12g24490
Os.55823.1.S1_at--161--4091Chr12:13980044..13980068 (25 bp)
CGAGCCCGCGCAAGTTGAGGCATAC
LOC_Os12g24490
Os.55823.1.S1_at--726--10751Chr12:13980058..13980082 (25 bp)
TTGAGGCATACGACAAGTCAACAAA
LOC_Os12g24490
Os.55823.1.S1_at--809--7071Chr12:13980074..13980098 (25 bp)
GTCAACAAAACATGCGCCGGAATGG
LOC_Os12g24490
Os.55823.1.S1_at--957--4551Chr12:13980087..13980111 (25 bp)
GCGCCGGAATGGAAACGTGTGCTTC
LOC_Os12g24490
Os.55823.1.S1_at--874--10331Chr12:13980131..13980155 (25 bp)
TTTTTCCACTTCGTTTGACTTTCTG
LOC_Os12g24490
Os.55823.1.S1_at--347--8931Chr12:13980146..13980170 (25 bp)
TGACTTTCTGTTTTAAGTGTCAGCT
LOC_Os12g24490
Os.55823.1.S1_at--359--7451Chr12:13980162..13980186 (25 bp)
GTGTCAGCTTGGTATAGTATGGATC
LOC_Os12g24490
Os.55823.1.S1_at--244--7971Chr12:13980182..13980206 (25 bp)
GGATCTGATATAGTGTTTACTAGCA
LOC_Os12g24490
Os.55823.1.S1_at--1160--9891Chr12:13980199..13980223 (25 bp)
TACTAGCAAGGTGTATATGCGATAC
LOC_Os12g24490
Target Sequence 
GCGGGCTGGTTCACCTGGTACTACTTCGGCGCGGCGCCGGCGCCGCCGGTGCTCCCCGATCATCATCAGCCGGCGGCGCC
GGTGGAGGCCCGCGGGCTCAGCCAGGAGGACATCGAGGCCATCCCGGCGTTCGAGTACAGGAGGGGATCATCGGGCAGCG
GGGTGGCGCAGTGCGCGGTGTGCATCGCCGCCGTGAAGGACGGGGACACGGTGCGGCGGCTGCCGGCGTGCGGCCACGCG
TTCCACGCGCCGTGCGTGGACGGGTGGCTGCGCGACCACGCGACGTGCCCCATGTGCCGCGCCGACGTCGTCAAGGTCGC
CGGAGAGACGACGCCGGCGACGGAGGAGGAGCCGCCCGTGTAGCCGAGCCCGCGCAAGTTGAGGCATACGACAAGTCAAC
AAAACATGCGCCGGAATGGAAACGTGTGCTTCCATCCCTGCTTGTTTCTTTTTTTTCCACTTCGTTTGACTTTCTGTTTT
AAGTGTCAGCTTGGTATAGTATGGATCTGATATAGTGTTTACTAGCAAGGTGTATATGCGATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55823.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis